Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A04_e121_02.seq
         (1483 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    50   3e-08

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 50.4 bits (115), Expect = 3e-08
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
 Frame = +3

Query: 114 WTPELXXSFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVL-QXKSDSGWVPLGF 290
           W      +F+  K     A LL +P+      + TD+S   +GA L Q + D     + F
Sbjct: 571 WGRNEQEAFDRVKDLFLEAVLLRYPDLNKIFYVQTDSSGYGLGAELYQIQEDGSRGVIAF 630

Query: 291 FSKKLNNAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPITSAXXKNSDKCSP 470
            S+ L   +  Y+  ++ELL +  ++  FR  +++    + TDH+ +           S 
Sbjct: 631 ASRSLRGPELNYTTTEKELLGVIFALHKFRIYIQVTKIIIRTDHQAL--KFLSRCRLLSE 688

Query: 471 RQFRYLDFISQFTTDIRYIAG 533
           R  R+   + Q+  +I  + G
Sbjct: 689 RLTRWTLILGQYDYEIELVKG 709


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,286
Number of Sequences: 336
Number of extensions: 2925
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44350025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)