Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A04_e121_02.seq
         (1483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    82   1e-15
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    82   1e-15
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    82   1e-15

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
 Frame = +3

Query: 114  WTPELXXSFEDSKSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQXKSDSGW 275
            W  E   +F++ K  +    +LA P+  A L       I TDAS   IGAVL  +   G 
Sbjct: 1294 WEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQ 1353

Query: 276  V-PLGFFSKKLNNAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPITSAXXKN 452
              P+ F SK L+ A+ +Y   D E LA+  +++ F+ ++     TVFTDHKP+ S     
Sbjct: 1354 QHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLL--K 1411

Query: 453  SDKCSPRQFRYLDFISQFTTDIRYIAGDHNHVXDALSR 566
                + R +R+   I +F   I Y+AG  N V DALSR
Sbjct: 1412 GSPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1449


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
 Frame = +3

Query: 114  WTPELXXSFEDSKSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQXKSDSGW 275
            W  E   +F++ K  +    +LA P+  A L       I TDAS   IGAVL  +   G 
Sbjct: 1197 WEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQ 1256

Query: 276  V-PLGFFSKKLNNAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPITSAXXKN 452
              P+ F SK L+ A+ +Y   D E LA+  +++ F+ ++     TVFTDHKP+ S     
Sbjct: 1257 QHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLL--K 1314

Query: 453  SDKCSPRQFRYLDFISQFTTDIRYIAGDHNHVXDALSR 566
                + R +R+   I +F   I Y+AG  N V DALSR
Sbjct: 1315 GSPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1352


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
 Frame = +3

Query: 114  WTPELXXSFEDSKSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQXKSDSGW 275
            W  E   +F++ K  +    +LA P+  A L       I TDAS   IGAVL  +   G 
Sbjct: 1208 WEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQ 1267

Query: 276  V-PLGFFSKKLNNAQRKYSPYDRELLAIYESIKYFRFMVELKPFTVFTDHKPITSAXXKN 452
              P+ F SK L+ A+ +Y   D E LA+  +++ F+ ++     TVFTDHKP+ S     
Sbjct: 1268 QHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLL--K 1325

Query: 453  SDKCSPRQFRYLDFISQFTTDIRYIAGDHNHVXDALSR 566
                + R +R+   I +F   I Y+AG  N V DALSR
Sbjct: 1326 GSPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,081,162
Number of Sequences: 27780
Number of extensions: 258329
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4256331302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)