Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A03_e113_01.seq
         (1504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        60   5e-09
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   3e-08
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             54   3e-07
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   5e-07
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            47   4e-05
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     34   0.34 
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              34   0.34 
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              33   0.59 
SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.78 
SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)                 32   1.4  
SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41)         31   3.2  
SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.5  
SB_8589| Best HMM Match : DUF164 (HMM E-Value=0.29)                    30   5.5  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.5  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.5  
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 60.1 bits (139), Expect = 5e-09
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
 Frame = +1

Query: 109 MASGVTVSDACKTTYEEIKKDKKH-RYVXFYIRDEKQIDVETVGGRNAE--YDSFLEDLQ 279
           M +G+ +       + EIKK     RY+ F + ++K+  V        E  ++  L+DL 
Sbjct: 247 MEAGLNIKGEVTDGWNEIKKAASGLRYIIFKMDEKKENVVFEKKKMKCECSHEDVLDDLP 306

Query: 280 KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 459
                E RY   + +Y +      E + + KL L+ WCPD  ++K +M+ +++F  +KK 
Sbjct: 307 ---ADEPRYIALNLDYKNV-----EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKK 358

Query: 460 LVGVQKYIQATDLSEASQEAVEEKLR 537
             G  K ++  + SE S EA++E+L+
Sbjct: 359 CPGGAKCLEIQERSELSFEALKEELK 384


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
 Frame = +1

Query: 115 SGVTVSDACKTTYEEIKKDKKH-RYVXFYIRDEKQIDVETVGGRNAE--YDSFLEDLQKG 285
           +G+ +       + EIK      RY  F + ++K+  V        E  +D  L+DL   
Sbjct: 2   AGLNIKSDVTDGWNEIKMVASGLRYTIFKMDEKKENVVMEKKKMITECCHDDVLDDLP-- 59

Query: 286 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 465
            T E RY   + +Y ++     E +++ KL L+ WCPD   +K KM+ +++F  + K   
Sbjct: 60  -TDEPRYVALNLDYKNE-----EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCP 113

Query: 466 GVQKYIQATDLSEASQEAVEEKLR 537
           G  K ++  D  + S EA++EKL+
Sbjct: 114 GGAKCLEIQDRFDLSFEALKEKLK 137


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 54.0 bits (124), Expect = 3e-07
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
 Frame = +1

Query: 115 SGVTVSDACKTTYEEIKKDKKHRYVXFYIRDEKQIDV-----ETVGGRNAEYDS--FLED 273
           SG+ V D      + +K  K H+Y  F I DE  + V     ++V     E D   F + 
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63

Query: 274 LQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALK 453
           ++K    E RY L+D ++  +     E      L  +SWC D A ++KKM  +S+ D ++
Sbjct: 64  VEKLSDREPRYILYDMKFPRK----EEKRIFNNLVFISWCSDKAPIEKKMKLASTQDYVR 119

Query: 454 KSLVGVQKYIQATDLSEASQEAVEEKLRAT 543
           K        + A D  +   + +  K   T
Sbjct: 120 KKFSEATTSVNANDFDDLDYDEIAAKAEKT 149


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 53.2 bits (122), Expect = 5e-07
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
 Frame = +1

Query: 115 SGVTVSDACKTTYEEIK-KDKKHRYVXFYIRDE----------KQIDVETVGGRNAEYDS 261
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T     A +D 
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 262 FLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSF 441
            LE L      E RY L+D  +  +     +      L  + WC D A +KK+M+ +++ 
Sbjct: 64  MLEKLSDS---EPRYILYDLNFPRK-----DGRAFHHLVYIFWCSDNAPIKKRMVSAATN 115

Query: 442 DALKKSLVGVQKYIQATDLSEASQEAVEEK 531
           + LK   V V+K  Q  D ++ + + + +K
Sbjct: 116 ELLKTKFV-VKKVFQINDRADLNYDDIADK 144


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +1

Query: 331 HQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 504
           H+ Q    A      FL   C D A +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 33.9 bits (74), Expect = 0.34
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 638 RGSRPPPPNTLQRAAPLXXXXXXXXXXVHSNGPAPPVHSSTGGVP 772
           +GS PPPP   +   P             +NGP PP HS  G  P
Sbjct: 162 QGSFPPPPPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAP 206


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 33.9 bits (74), Expect = 0.34
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 638 RGSRPPPPNTLQRAAPLXXXXXXXXXXVHSNGPAPPVHSSTGGVP 772
           +GS PPPP   +   P             +NGP PP HS  G  P
Sbjct: 74  QGSFPPPPPMGKPPPPSGNKPTFGNSRTSTNGPPPPPHSRHGSAP 118


>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 33.1 bits (72), Expect = 0.59
 Identities = 25/74 (33%), Positives = 32/74 (43%)
 Frame = +3

Query: 531 TPRH*PSVNPMHLALPSTPPSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAHAQTDA 710
           TP H P V+      P + PSHT     V  P SHT      PP+ +    P     ++ 
Sbjct: 440 TPSHTPPVSTPSHTPPVSTPSHTP---PVSTP-SHT------PPVSTPSHTPPVSTPSNT 489

Query: 711 APRFTPTGRRPQFT 752
            P FTP+   P FT
Sbjct: 490 PPVFTPSHTPPVFT 503



 Score = 29.9 bits (64), Expect = 5.5
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +3

Query: 531 TPRH*PSVNPMHLALPSTPPSHTRYERRVRGPLSHTVV--RDRRPPIHSNGRRPSAHAQT 704
           TP H P V+      P + PSHT     V  P +   V      PP+ +    P     +
Sbjct: 458 TPSHTPPVSTPSHTPPVSTPSHTP---PVSTPSNTPPVFTPSHTPPVFTPSHTPPVSTPS 514

Query: 705 DAAPRFTPTGRRPQFT 752
           ++ P  TP+   P FT
Sbjct: 515 NSPPVSTPSNTLPVFT 530


>SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 32.7 bits (71), Expect = 0.78
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 631 HIPWFETAAPQYTPTGGAPQLTLKQTPLLGSLQRAGAPSSLFNGWCSLLHNK 786
           H PW E    +  PT    +  L+  P   +L +    SSL + W SL+ NK
Sbjct: 443 HCPWREKRVARVKPTPWITKQVLQLIPKRDALLKKARRSSLADDWDSLVRNK 494


>SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)
          Length = 288

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 551 SESDAF-SSPLNSPLTHTLRTTRARPLVTYRGSRPPPPNTLQRAAP 685
           ++S +F SS + SPLT  L     RPLVT   S PP   T Q AAP
Sbjct: 20  TQSPSFTSSVVTSPLTVNL----CRPLVTIATSCPPVTTTAQAAAP 61


>SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 551 SESDAF-SSPLNSPLTHTLRTTRARPLVTYRGSRPPPPNTLQRAAP 685
           ++S +F SS + SPLT  L     RPLVT   S PP   T Q AAP
Sbjct: 20  TQSPSFTSSVVTSPLTVNL----CRPLVTIATSCPPVTTTAQAAAP 61


>SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41)
          Length = 193

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 220 DVETVGGRNAEYDSFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 366
           D E  G R   + S+L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 83  DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 134


>SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 220 DVETVGGRNAEYDSFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 366
           D E  G R   + S+L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 139 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 190


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 220 DVETVGGRNAEYDSFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 366
           D E  G R   + S+L+DL++        C YG  + E T+   G  +ASKK
Sbjct: 422 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGGSEAEVTYSLHGFGDASKK 473


>SB_8589| Best HMM Match : DUF164 (HMM E-Value=0.29)
          Length = 306

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 657 PPIHSNGRRPSAHAQTDAAP 716
           P +H NG RPSAH +T   P
Sbjct: 2   PQVHMNGGRPSAHRKTSKQP 21


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 657 PPIHSNGRRPSAHAQTDAAP 716
           P +H NG RPSAH +T   P
Sbjct: 2   PQVHMNGGRPSAHRKTSKQP 21


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = +3

Query: 459  SRRRTEVHTGDRPLGGVAGGRRGETPRH*PSVNPMHLALPSTPPSHTRYERRVRGPLSHT 638
            ++RRT   T   P       RRG      P  +P     P+T  +  R   ++ GP + T
Sbjct: 5903 AKRRTNGSTTRTPEVKATPSRRGGAVSRIPRSSPA--GSPATSFTRERSRDKLSGPAAAT 5960

Query: 639  VVRDRRPPIHSNGRRPSAH 695
            + R+R P    +G   SAH
Sbjct: 5961 LTRERSPSFTRSG---SAH 5976


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 326 YSKSKRPYLHSPVP-PFCRS--SRKLSYSALRPP 234
           YS   RPY HSPV  P+C S   R   YS +  P
Sbjct: 112 YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,201,668
Number of Sequences: 59808
Number of extensions: 701083
Number of successful extensions: 2018
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4871177455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)