Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A03_e113_01.seq
         (1504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   1.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   9.0  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
 Frame = +3

Query: 519 RRGETPRH*PSVN-PMHLALPSTPPSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAH 695
           RR   P   P  N P+++  P  P    R E  +     +      RP   S  R P   
Sbjct: 60  RREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNN-----RPVYISQPRPPHPR 114

Query: 696 AQTDAAPRFTPTGRRPQFTLQ 758
            + +A P   P   RP +  Q
Sbjct: 115 LRREAEPEAEPGNNRPVYIPQ 135



 Score = 25.0 bits (52), Expect = 1.7
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
 Frame = +3

Query: 519 RRGETPRH*PSVN-PMHLALPSTPPSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAH 695
           RR   P   P  N P+++  P  P    R E  +     +      RP   S  R P   
Sbjct: 116 RREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNN-----RPVYISQPRPPHPR 170

Query: 696 AQTDAAPRFTPTGRRPQFTLQ 758
            + +A P   P   RP +  Q
Sbjct: 171 LRREAEPEAEPGNNRPVYIPQ 191


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 462 RRRTEVHTGDRP 497
           RR   VHTG+RP
Sbjct: 54  RRHLRVHTGERP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,330
Number of Sequences: 438
Number of extensions: 6574
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52515375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)