Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_A02_e105_02.seq
(1389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 31 1.6
09_06_0081 + 20745627-20748144,20748211-20748308 30 5.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 5.0
08_01_0059 - 394001-394708 30 5.0
07_01_0080 + 587674-588510 30 5.0
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 30 5.0
12_02_1174 - 26696869-26698191 29 6.6
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 29 6.6
07_03_1136 + 24218601-24218734,24218769-24219906 29 8.7
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 29 8.7
02_05_0686 - 30900748-30902167,30903442-30904742 29 8.7
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 31.5 bits (68), Expect = 1.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPP 1364
P P PPP + P PPPLP PP
Sbjct: 1164 PPPATPPPPPPLSPSLPPPPPPPPLPSGPPP 1194
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 1254 RXTXXXPAXXXRPXPPPXXGAXXAPXXPPPLPXXXP 1361
R PA P P A AP PP LP P
Sbjct: 705 RAPTSPPAAATPRAPTPPAAAAAAPAAPPALPSGLP 740
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 1290 PXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
P PPP AP PPP P PP P
Sbjct: 109 PPPPPPSPPPSAPPPPPPPPTQPPPREAQLAP 140
>08_01_0059 - 394001-394708
Length = 235
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 1290 PXPPPXXGAXXAPXXPPPLPXXXPP 1364
P PPP A P PPP P PP
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPP 26
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 1290 PXPPPXXGAXXAPXXPPPLPXXXPP 1364
P PPP G+ P PPP P PP
Sbjct: 95 PPPPPSSGSPPPPPPPPPPPPPPPP 119
>02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +3
Query: 1185 PPTFXIKNXXEXPXSFRXGXXXXRXTXXXPAXXXRPXPPPXXGAXXAPXXPPPLPXXXPP 1364
P F + P G T P P PPP P PP P PP
Sbjct: 320 PCCFKTSSDATTPTLVTGGTQENNATSDAPKLMPPPPPPPPPPPPPPPPPPPRPPPPPPP 379
Query: 1365 XXXGXXP 1385
G P
Sbjct: 380 IKKGAPP 386
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +3
Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
P +P PPP P PPP P PP G P
Sbjct: 204 PVVQPKPQPPPTL----PPPSPPPPPPTVPPRTPGDTP 237
>02_05_1057 + 33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 1375 PXXXGGXXXGKGGGXXGAXXAPXXGGGXGRI 1283
P GG G GGG GA GGG G +
Sbjct: 7 PGTIGGGGGGGGGGTAGACCPGAAGGGGGGV 37
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 8.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 1360 GXXXGKGGGXXGAXXAPXXGGGXGRIXXAG 1271
G G GGG G AP GGG G + G
Sbjct: 183 GRAPGGGGGGGGPGRAPGGGGGGGGLGGGG 212
>05_07_0236 - 28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 29.1 bits (62), Expect = 8.7
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 1296 PPPXXGAXXA-PXXPPPLPXXXPP 1364
PPP G+ P PPPLP PP
Sbjct: 98 PPPSSGSGHTLPSPPPPLPPLLPP 121
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 8.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 1290 PXPPPXXGAXXAPXXPPPLPXXXPP 1364
P PPP A AP PPP P PP
Sbjct: 314 PPPPPPKPAAAAPPPPPP-PKAAPP 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,465,166
Number of Sequences: 37544
Number of extensions: 396251
Number of successful extensions: 2762
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2447
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4373994716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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