Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A02_e105_02.seq
         (1389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.94 
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               31   2.2  
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.9  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 31   2.9  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     30   5.0  

>SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
            P     P P P      AP  PPP P   PP   G  P
Sbjct: 357  PPSTPAPTPAPLSSTPCAPFAPPPPPPPPPPPAPGSTP 394


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPP 1364
            P       PPP      AP  PPPLP   PP
Sbjct: 67   PPAAAPAAPPPPAAPPAAPPPPPPLPAPPPP 97


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
            PA    P PPP      AP  PPP P   PP   G  P
Sbjct: 296  PADGSAPAPPPPPPPGGAPPPPPP-PPPPPPGDGGAPP 332



 Score = 30.7 bits (66), Expect = 2.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 1290 PXPPPXXGAXXAPXXPPPLPXXXPP 1364
            P PPP  G+  AP  PPP P   PP
Sbjct: 292  PPPPPADGSAPAPPPPPP-PGGAPP 315


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 1260 TXXXPAXXXRPXPPPXXGAXXAPXXPPPLPXXXP 1361
            T   PA    P PPP   A   P  PPP P   P
Sbjct: 73   TTDGPAAVIPPPPPPPPPASNVPAPPPPPPVMPP 106


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
            PA    P PPP   A   P    PL    PP   G  P
Sbjct: 159  PATGGPPPPPPIAPAATVPAPAVPLAAASPPPPSGGPP 196


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 341 NLLHQIVKSMYLLNCDYSKNPLYIKMKCH*ETFHNLH 231
           +++ +I+K +   NCDY +   Y+ + CH     N H
Sbjct: 858 DMIREIMKVLEANNCDYEQREKYLLLCCHGSPAENNH 894


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,510,790
Number of Sequences: 59808
Number of extensions: 435173
Number of successful extensions: 1343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4425141929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)