BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_A02_e105_02.seq (1389 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.94 SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6 SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 2.2 SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.9 SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 2.9 SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 30 5.0 >SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 522 Score = 32.3 bits (70), Expect = 0.94 Identities = 14/38 (36%), Positives = 14/38 (36%) Frame = +3 Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385 P P P P AP PPP P PP G P Sbjct: 357 PPSTPAPTPAPLSSTPCAPFAPPPPPPPPPPPAPGSTP 394 >SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 145 Score = 31.5 bits (68), Expect = 1.6 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = +3 Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPP 1364 P PPP AP PPPLP PP Sbjct: 67 PPAAAPAAPPPPAAPPAAPPPPPPLPAPPPP 97 >SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) Length = 341 Score = 31.1 bits (67), Expect = 2.2 Identities = 16/38 (42%), Positives = 16/38 (42%) Frame = +3 Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385 PA P PPP AP PPP P PP G P Sbjct: 296 PADGSAPAPPPPPPPGGAPPPPPP-PPPPPPGDGGAPP 332 Score = 30.7 bits (66), Expect = 2.9 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 1290 PXPPPXXGAXXAPXXPPPLPXXXPP 1364 P PPP G+ AP PPP P PP Sbjct: 292 PPPPPADGSAPAPPPPPP-PGGAPP 315 >SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2143 Score = 30.7 bits (66), Expect = 2.9 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = +3 Query: 1260 TXXXPAXXXRPXPPPXXGAXXAPXXPPPLPXXXP 1361 T PA P PPP A P PPP P P Sbjct: 73 TTDGPAAVIPPPPPPPPPASNVPAPPPPPPVMPP 106 >SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) Length = 305 Score = 30.7 bits (66), Expect = 2.9 Identities = 14/38 (36%), Positives = 14/38 (36%) Frame = +3 Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385 PA P PPP A P PL PP G P Sbjct: 159 PATGGPPPPPPIAPAATVPAPAVPLAAASPPPPSGGPP 196 >SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) Length = 937 Score = 29.9 bits (64), Expect = 5.0 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -2 Query: 341 NLLHQIVKSMYLLNCDYSKNPLYIKMKCH*ETFHNLH 231 +++ +I+K + NCDY + Y+ + CH N H Sbjct: 858 DMIREIMKVLEANNCDYEQREKYLLLCCHGSPAENNH 894 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 28,510,790 Number of Sequences: 59808 Number of extensions: 435173 Number of successful extensions: 1343 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 791 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1228 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4425141929 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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