Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A02_e105_02.seq
         (1389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    32   0.84 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    32   0.84 
Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical pr...    30   3.4  
Z81029-2|CAB02696.1|  220|Caenorhabditis elegans Hypothetical pr...    29   7.8  
AF026214-5|AAB71310.1|  525|Caenorhabditis elegans Hypothetical ...    29   7.8  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 32.3 bits (70), Expect = 0.84
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
            P    RP PPP  G    P  PPP     PP   G  P
Sbjct: 281  PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 32.3 bits (70), Expect = 0.84
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
            P    RP PPP  G    P  PPP     PP   G  P
Sbjct: 291  PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328


>Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical
           protein F43A11.6 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 709 YVKLFKIKSMFIMTPSNFSSKIVQNSSSLVQNICLE-FTF 593
           Y KLF IK+ FI+T    + K++ N + L+  + +E FTF
Sbjct: 128 YKKLFHIKTTFILTMIIIALKLIDNLNYLITFLPIECFTF 167


>Z81029-2|CAB02696.1|  220|Caenorhabditis elegans Hypothetical
           protein C01A2.2 protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 NLISTYFLQSDVKGLF*INLEFYITNFSFNYIFSLL 406
           +++  Y LQ   K  F   L FY+TNF  N IF++L
Sbjct: 115 HILLFYGLQKSKKVFFSPFLVFYMTNFILNCIFTIL 150


>AF026214-5|AAB71310.1|  525|Caenorhabditis elegans Hypothetical
           protein F52H2.6 protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 356 LEFYITNFSFNYIFSLLLPLVFNYNTVF 439
           +EF + +F + ++   LLPL F +NTVF
Sbjct: 18  VEFIMFHFRWVFVVPFLLPLSFLFNTVF 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,138,262
Number of Sequences: 27780
Number of extensions: 373608
Number of successful extensions: 1391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3933724284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)