Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A02_e105_02.seq
         (1389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    26   0.89 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   2.7  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   6.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   6.3  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.8 bits (54), Expect = 0.89
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 780 SYYTDNYNFPNCNQCNFSYSNKN 712
           S  ++NYN+ N N  N +Y+N N
Sbjct: 83  SSLSNNYNYSNYNNYNNNYNNYN 105


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 780 SYYTDNYNFPNCNQCNFSYSNKNTM*NS 697
           S  ++NY + N N  N +Y+N N   N+
Sbjct: 316 SSLSNNYKYSNYNNYNNNYNNYNNYNNN 343


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 798 THTYTQSYYTDNYNFPNCNQ 739
           T TY +  Y+D Y++ N ++
Sbjct: 15  TWTYAEELYSDKYDYVNIDE 34


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 798 THTYTQSYYTDNYNFPNCNQ 739
           T TY +  Y+D Y++ N ++
Sbjct: 15  TWTYAEELYSDKYDYVNIDE 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,849
Number of Sequences: 438
Number of extensions: 5061
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 48265326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)