Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A02_e105_02.seq
         (1389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    30   4.1  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   9.5  
At1g61080.1 68414.m06877 proline-rich family protein                   29   9.5  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   9.5  

>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPP 1364
            PA    P PPP       P  PPP P   PP
Sbjct: 1096 PAALFPPLPPPPSQPPPPPLSPPPSPPPPPP 1126


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
            non-consensus splice site at the intron:exon boundary
            (AT:exon)
          Length = 247

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPLPXXXPPXXXGXXP 1385
            PA      PPP      AP  PPP P   PP      P
Sbjct: 105  PASAPTVSPPPVSPPP-APTSPPPTPASPPPAPASPPP 141


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 1275 AXXXRPXPPPXXGAXXAPXXPPPLP 1349
            A    P PPP  G   AP  PPP P
Sbjct: 532  AAVAPPPPPPPPGTAAAPPPPPPPP 556


>At1g59910.1 68414.m06749 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02128
          Length = 929

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +3

Query: 1272 PAXXXRPXPPPXXGAXXAPXXPPPL--PXXXPP 1364
            PA    P PPP   A   P  PPP   P   PP
Sbjct: 378  PANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPP 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,236,313
Number of Sequences: 28952
Number of extensions: 323543
Number of successful extensions: 1424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3643387776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)