Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_A01_e097_01.seq
(1414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0963 - 12769715-12769859,12770639-12770889 91 1e-18
07_03_1662 + 28447419-28447666,28448429-28448573 89 8e-18
09_02_0036 + 3217163-3217584,3217752-3218322 30 3.8
10_06_0052 + 10106778-10107017,10107420-10107969,10108134-101083... 30 5.1
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 29 6.7
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 29 6.7
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162... 29 6.7
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 29 6.7
10_06_0188 - 11603941-11604528 29 8.8
09_02_0195 + 5643549-5645090 29 8.8
01_03_0093 - 12422558-12422607,12422679-12422935,12423565-124239... 29 8.8
>03_02_0963 - 12769715-12769859,12770639-12770889
Length = 131
Score = 91.5 bits (217), Expect = 1e-18
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Frame = +2
Query: 227 SLKFTIDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKTKVAINADIP 403
S+ F IDC P +D I+++ + EK+L+ER+KV GK NLG V ++RDKTKV + +D P
Sbjct: 21 SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGP 80
Query: 404 FSXXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 517
FS DWLRV+AS D YELRYF
Sbjct: 81 FSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120
>07_03_1662 + 28447419-28447666,28448429-28448573
Length = 130
Score = 89.0 bits (211), Expect = 8e-18
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Frame = +2
Query: 227 SLKFTIDCTHPAEDSILDVGNFEKYLKERVKVE-GKTNNLGNHVVIARDKTKVAINADIP 403
S+ F IDC+ P ED I+++ + EK+L+ER+KV GK NLG+ V + RDKTKV + +D
Sbjct: 20 SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGA 79
Query: 404 FSXXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 517
FS DWLRV+A+ D YELRYF
Sbjct: 80 FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 651 ITIHWPSFYNVV-TGKTLALPNLIALQH 731
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>10_06_0052 +
10106778-10107017,10107420-10107969,10108134-10108358,
10108552-10108865,10108880-10109214,10109298-10109549,
10109630-10109740,10109828-10109888,10110038-10110130,
10110208-10110264
Length = 745
Score = 29.9 bits (64), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 136 RRKERPVTPEDW*ERSKRWQNSR 204
R+K +PV E+W +RSK W +R
Sbjct: 182 RKKGQPVLMEEWTQRSKNWVRAR 204
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 29.5 bits (63), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 713 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 811
L+R + PF SW N +A D+ + L LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 29.5 bits (63), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 713 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 811
L+R + PF SW N +A D+ + L LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436
>03_01_0205 +
1621760-1621784,1622079-1622208,1622569-1622635,
1622806-1622909,1623099-1623147,1623190-1623290,
1623623-1623740,1624342-1624455
Length = 235
Score = 29.5 bits (63), Expect = 6.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 186 FTPFLPVFWCNWPFFATGXLCNCHXWQQNTCSA 88
F+P V + A G C CH W N C +
Sbjct: 131 FSPLQKVAFLEMLSLAGGTKCECHFWSSNYCGS 163
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 29.5 bits (63), Expect = 6.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 136 RRKERPVTPEDW*ERSKRWQNSR 204
R+K +PV E+W +RS+ W +R
Sbjct: 183 RKKRQPVPMEEWIQRSRNWVRAR 205
>10_06_0188 - 11603941-11604528
Length = 195
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 231 RLIFLLAPLPRILPPFTPFLPVFWCNWPFFATG 133
R F A LP PP P +++C W FF G
Sbjct: 45 RRAFSAAELPAA-PPIVPGTDMYFCTWAFFPLG 76
>09_02_0195 + 5643549-5645090
Length = 513
Score = 29.1 bits (62), Expect = 8.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 198 ILPPFTPFLPVFWCNWPFFAT 136
ILPP P LP+ W +W AT
Sbjct: 152 ILPPSNPTLPMQWIDWEALAT 172
>01_03_0093 -
12422558-12422607,12422679-12422935,12423565-12423932,
12423939-12424800,12425247-12425464
Length = 584
Score = 29.1 bits (62), Expect = 8.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 136 RRKERPVTPEDW*ERSKRWQNSR 204
R+K +PV E+W +RS+ W +R
Sbjct: 170 RKKGQPVPMEEWTQRSRNWARAR 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,285,574
Number of Sequences: 37544
Number of extensions: 608528
Number of successful extensions: 1477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4466811580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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