Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A01_e097_01.seq
         (1414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    81   1e-15

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = +2

Query: 224 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNL-GNHVVIARDKTKVAINADI 400
           + LKF ++C +P ED IL + + E +L E++KV GKT +L  N+V +   K+KV++ +++
Sbjct: 19  VHLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEV 78

Query: 401 PFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDSYELRYF 517
           PFS                  DWLRVVA   ++YE+RYF
Sbjct: 79  PFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,927,464
Number of Sequences: 27780
Number of extensions: 482445
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4016977708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)