Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_A01_e097_01.seq
         (1414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    87   3e-17
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    87   3e-17
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    86   5e-17
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    83   4e-16
At2g36885.2 68415.m04523 expressed protein                             29   9.7  
At2g36885.1 68415.m04522 expressed protein                             29   9.7  

>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 87.0 bits (206), Expect = 3e-17
 Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
 Frame = +2

Query: 230 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 409
           + FTIDC+ P +D I+++ + EK+L+ER+KV GK   LG+ V I R+K+K+ + AD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75

Query: 410 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 517
                             DWLRV+A+  D   YELRYF
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 87.0 bits (206), Expect = 3e-17
 Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
 Frame = +2

Query: 230 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 409
           + FTIDC+ P +D I+++ + EK+L+ER+KV GK   LG+ V I R+K+K+ + AD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75

Query: 410 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 517
                             DWLRV+A+  D   YELRYF
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 86.2 bits (204), Expect = 5e-17
 Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
 Frame = +2

Query: 230 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 409
           + FTIDC+ P +D I+++ + EK+L+ER+KV GK   LG+ V I R+K+K+ + AD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75

Query: 410 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 517
                             DWLRV+A+  D   YELRYF
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
 Frame = +2

Query: 230 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 409
           + F IDC+ P +D+IL++   EK+L+ER+KV GK   LGN V I R   K+ +NA+  FS
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77

Query: 410 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRYF 517
                             DWLRV+AS  D   YE+RYF
Sbjct: 78  KRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115


>At2g36885.2 68415.m04523 expressed protein
          Length = 227

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 324 STLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIFLLAPLPRILPPFTP 178
           S L+      S LP+SR+L+S  C+    N+     L+   R   P TP
Sbjct: 8   SALSNHISPASSLPSSRLLNSTQCLSRFSNVSSFPALSTFRRRKIPLTP 56


>At2g36885.1 68415.m04522 expressed protein
          Length = 256

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 324 STLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIFLLAPLPRILPPFTP 178
           S L+      S LP+SR+L+S  C+    N+     L+   R   P TP
Sbjct: 8   SALSNHISPASSLPSSRLLNSTQCLSRFSNVSSFPALSTFRRRKIPLTP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,728,504
Number of Sequences: 28952
Number of extensions: 444461
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3720496512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)