Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H12_e96_16.seq
         (1488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    27   0.36 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           27   0.36 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    26   0.82 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   1.1  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           24   2.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   2.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   5.8  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 340 YQLQAPQYSHPEVPIHQNMAPIPISIPAGASLTPVS 447
           +Q+ +  +SH   P+H +M P  + +  G SLTP++
Sbjct: 354 HQISSMGHSHAH-PMHHDMLPETMHMGMGPSLTPLA 388


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 340 YQLQAPQYSHPEVPIHQNMAPIPISIPAGASLTPVS 447
           +Q+ +  +SH   P+H +M P  + +  G SLTP++
Sbjct: 354 HQISSMGHSHAH-PMHHDMLPETMHMGMGPSLTPLA 388


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 301 NGLSGRR*EIMVEPRSSVMTAELSPTPISKRRHQMTRRSPR*PGNSS 161
           NGLSG + +I+    +++ + E+ P P+     Q T+ +   P  +S
Sbjct: 369 NGLSGTKYQILNAINAALKSDEIPPEPVPTPEPQPTQTTESEPTQAS 415


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
 Frame = +1

Query: 232 SAPPSSQKTWVQPLSPNVSPTIRYQYMY-SPYESHKTYQLQAPQYSHPEVPIHQNMAPIP 408
           + P      ++ P   +  P + Y   Y + Y    +       ++H + PI     P  
Sbjct: 15  NTPKDMNARYLPPSLSDTRPMLPYPQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPK 74

Query: 409 ISIPAGASLTPVSLQHVQLVPCMCPV-APEEAEKLQEQSGA 528
             IP+    +P+  + V + P   P  +P   E+L     A
Sbjct: 75  REIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDA 115


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYES 330
           S S+ PS   T    LS N +P   Y Y   PYE+
Sbjct: 128 STSSIPSPSTT--DDLSTNPTPPPHYTYQIIPYEA 160


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = +1

Query: 250 QKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPIPIS 414
           Q  W        +PT + Q + SP     TY   A      E P+  +   +P+S
Sbjct: 175 QVQWSATPQAGSTPTYQTQGLLSPSYGGTTYSFTADFRPPQETPVLASYKSVPMS 229


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 226 SDSAPPSSQKTWVQPLSPNVSPT 294
           SD  PP+++    QP+   +SPT
Sbjct: 222 SDKNPPNTENNCAQPVVVIMSPT 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,932
Number of Sequences: 336
Number of extensions: 4446
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44554875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)