Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H12_e96_16.seq
(1488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 41 4e-04
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.31
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.31
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 29 1.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 1.6
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 29 1.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 6.6
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 27 6.6
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 27 8.8
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 8.8
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 41.1 bits (92), Expect = 4e-04
Identities = 37/127 (29%), Positives = 51/127 (40%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
S S+P S P SP+ SPT YSP + +Y +P YS P P + A
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYS--ATS 1610
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPV 585
P P S +P S + P P +P + S P + T PSY+ + P
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPS 1668
Query: 586 AVASDPS 606
+ PS
Sbjct: 1669 YSPTSPS 1675
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 31.5 bits (68), Expect = 0.31
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +1
Query: 355 PQYSHPEVPIHQNMAPI--PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQ---EQ 519
P YS P P + P S+P+ P L Q+ P PV P ++
Sbjct: 100 PSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPP--PVRPNVMSQMPPPPSY 157
Query: 520 SGAGPYVAQTY-SQPSYTVSQPVAVAS 597
S +G Y +QTY S +YT S P+ AS
Sbjct: 158 SSSGSY-SQTYQSNANYTASSPLPTAS 183
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.31
Identities = 33/122 (27%), Positives = 46/122 (37%)
Frame = +1
Query: 238 PPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPIPISI 417
PPS+ + SP +P R + P S K + P P +P+ P+P I
Sbjct: 991 PPSAPLSKPVSTSP-AAPLARVPPV--PKLSSKAPPVPLPSADAPPIPVPSTAPPVP--I 1045
Query: 418 PAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVAS 597
P P S P P E + SGA P A + P V +P +VA+
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP---VPKP-SVAA 1101
Query: 598 DP 603
P
Sbjct: 1102 PP 1103
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Frame = +1
Query: 277 PNVSPTIRYQY--MYSPYESHKTYQLQAPQ------YSHPEVPIHQNMAPIPIS 414
PN + + Y Y PY S + QA Q Y HP P+ + M P+P S
Sbjct: 722 PNTYSPVPFPYNTSYPPYMSPTSNMPQAFQAYSQYPYQHPPFPLSEQMLPLPTS 775
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Frame = +1
Query: 190 VASSDAFFLKWG--SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQ---- 351
V+SS + W + SA PS+ W QP +P +P + P T Q
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPS 475
Query: 352 --APQYSHPEVPIHQNMAPIPISIPAGASLTPV 444
P + P +P P P G L P+
Sbjct: 476 NLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPI 508
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 29.1 bits (62), Expect = 1.6
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Frame = +1
Query: 286 SPTIRYQYMYSPYESHKTYQLQAPQYS--HPEVPIHQ---NMAP----IPISIPAGASLT 438
SP+ R+ YSP TYQ + YS H E+ +Q +M P + S T
Sbjct: 321 SPSSRFPTPYSPSVPFGTYQEKEKSYSQDHAELSYYQQSPSMMPPYDRSSVYFQQPLSRT 380
Query: 439 PVSLQHVQLVPCMC---PVAPEEAEKLQEQSGAGPYVAQTY-SQPSYTVSQPVAVASDPS 606
V Q Q P + P EQ G P +Q + P V++P + +P+
Sbjct: 381 DVPNQSFQQYPTTVDGGSMIPNLYPTSAEQMGLYPQDSQNKDTYPKSLVNRPSSAVCEPA 440
Query: 607 KNSN 618
+N +
Sbjct: 441 RNDS 444
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 484 VAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNS 615
V+P E+ + +S QT S+T S PV++ S + +S
Sbjct: 246 VSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSS 289
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = -3
Query: 571 QYKTAGSTSELRKDQHRSAPVIFLPLQELL------DTYMVRVERAAKIPG 437
Q + G EL+ DQ++ P++ +QE L ++M +V+R +PG
Sbjct: 318 QKRVVGENLELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPG 368
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQ-----LQAPQYSH 369
S++ P K+ P+S +SP + SP +H T++ L QYSH
Sbjct: 8 SETLPKQESKSSSAPVSNFLSPNNLTEQTCSPLRAHSTFKEPVFLLSQRQYSH 60
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 8.8
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +1
Query: 358 QYSHPEVPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCMC----PVAPEEAEKLQEQSG 525
Q S+ E P HQ+ + + +S A +PV +L PV AE ++ S
Sbjct: 831 QLSNMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENTSAEPIENTSA 890
Query: 526 AGPYVAQTYSQPSYTVSQPVA 588
P+ Q + +S P A
Sbjct: 891 PTPFEIANKQQATEPISAPFA 911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,001,555
Number of Sequences: 5004
Number of extensions: 71598
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 830530906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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