Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H12_e96_16.seq
(1488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 41 0.002
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 32 1.3
07_01_0469 - 3552409-3553368 31 3.1
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 31 3.1
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 30 4.1
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 30 4.1
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 30 4.1
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 30 5.4
03_04_0001 - 16208401-16208778 29 9.4
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 41.1 bits (92), Expect = 0.002
Identities = 37/129 (28%), Positives = 49/129 (37%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
S S P+S P SP+ SPT Y YSP +P YS P P +
Sbjct: 1694 SPSYNPTSPSYSYSPTSPSYSPT-SPSYSYSP---------TSPSYS-PTSPSYNYSPTS 1742
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPV 585
P P S +P S + P P +P + S P A + + P Y+ + P
Sbjct: 1743 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSP--AYSPTSPGYSPTSPS 1800
Query: 586 AVASDPSKN 612
S PS N
Sbjct: 1801 YSPSSPSYN 1809
Score = 37.1 bits (82), Expect = 0.036
Identities = 35/124 (28%), Positives = 50/124 (40%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
S S P+S P SP+ SPT Y YSP + +Y +P YS P P + +
Sbjct: 1710 SPSYSPTSPSYSYSPTSPSYSPT-SPSYNYSP--TSPSYSPTSPSYS-PTSPSYSPTS-- 1763
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPV 585
P P S +P S + P P +P + S + P + S YT S
Sbjct: 1764 PSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSP--SYNPSSVKYTPSHAY 1821
Query: 586 AVAS 597
+ +S
Sbjct: 1822 SPSS 1825
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.9 bits (69), Expect = 1.3
Identities = 26/105 (24%), Positives = 38/105 (36%)
Frame = +1
Query: 268 PLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPIPISIPAGASLTPVS 447
P SP SPT YSP + Y +P Y+ + A P S P + + S
Sbjct: 1720 PTSPGYSPT---SPSYSP--TSPNYSPTSPSYNPSSAKYSPSHAYSPSS-PRLSPYSQTS 1773
Query: 448 LQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQP 582
+ P P +P ++ S PY P Y+ + P
Sbjct: 1774 PNYSPTSPTYSPTSPSYSQPSPSYSPTSPYTTSGGPSPDYSPTSP 1818
>07_01_0469 - 3552409-3553368
Length = 319
Score = 30.7 bits (66), Expect = 3.1
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 370 PEVPIHQNMAPIPISIPAGA-SLTPVSLQHVQLV--PCMCPVAPEEAEKLQEQSGAG--P 534
P VP +AP+P+S PA A S P S V P P + L S +G P
Sbjct: 224 PAVPAAPALAPVPVSAPASALSFAPASAVRVPSSGNGGWLPATPSGSRDLSSSSSSGSEP 283
Query: 535 YVAQTYSQPSYTVSQ 579
+TY S + S+
Sbjct: 284 GSGETYLPGSRSRSE 298
>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
Length = 283
Score = 30.7 bits (66), Expect = 3.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 348 ASTAILSSRSSDPPKYG-SYTYQYSCRSEPYP 440
AS + DPP Y +YTY+++C + P P
Sbjct: 105 ASKLVQQENDDDPPLYRVTYTYEHTCNTTPVP 136
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 30.3 bits (65), Expect = 4.1
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +1
Query: 322 YESHKTYQLQAPQYSHPEVPIHQNMAPIPISIPAGASLTPVSLQH---VQLVPCMCPVAP 492
++ +T QLQ Q V HQ + P+ + AS+ H +QL+ + P P
Sbjct: 555 HQQQQTQQLQPVQQVQQSVQEHQQIKIQPVHVSMDASMNTQVADHQMKLQLLKALQPQQP 614
Query: 493 EEAEKLQEQSGAGPYVAQTYSQPSYTVSQPV 585
+E+ + V + S P V Q V
Sbjct: 615 LISEQQKMLLDLQQQVINSQSAPQQCVQQKV 645
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 30.3 bits (65), Expect = 4.1
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Frame = +1
Query: 232 SAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPIPI 411
S+ ++++ P++ + S +RY+YM + + +L+AP EV ++ I +
Sbjct: 27 SSGTATRRNAGSPVALSSSDKVRYRYMMAIHALQLDVKLEAPN-RLGEVAARMSVPAIAV 85
Query: 412 -SIPAGASLTPVSLQHVQL-----VPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTV 573
+ P GA T S ++ PC P A + Q+ AG ++ +S P T
Sbjct: 86 YTSPPGAVYTSSSSSELEASSRGSAPCATAAPPSPASSHRHQAIAGG-LSCLFSSP--TA 142
Query: 574 SQPVAVASD 600
+ A A D
Sbjct: 143 APRAAAAQD 151
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 30.3 bits (65), Expect = 4.1
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = +1
Query: 343 QLQAPQYSHPEVPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQS 522
Q + P+ +HP P++Q +P+ + + S T QL P PV + Q S
Sbjct: 1803 QFRLPR-AHPTAPVNQQQRQLPVRLESTCSRT-------QLTPVSTPVNARQLSS-QSVS 1853
Query: 523 GAGPYVAQTYSQPSYTVSQPVAVASDPSKN 612
+ + S P +S P A+A++ S N
Sbjct: 1854 PVSNSSSSSSSHPGPALSNP-ALAANSSSN 1882
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 553 STSELRKDQHRSAPVIFLPLQELLDTYMVRVERAAKIPG 437
ST E RK H+ +P L + TY++ ++R+ +PG
Sbjct: 174 STKESRKGLHKDSPRPLLISKSTDGTYVIGIDRSTGVPG 212
>03_04_0001 - 16208401-16208778
Length = 125
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 391 NMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYT 570
+++P+P+S+P A +P ++ ++P P A A GP SQ S
Sbjct: 23 SISPLPLSLPLRAQASPEAVAVALVLPRADP-AEVAATAFPTSGSGGPLPPPPSSQASLA 81
Query: 571 VSQPVAVAS 597
V P A AS
Sbjct: 82 V-DPTAAAS 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,745,008
Number of Sequences: 37544
Number of extensions: 511084
Number of successful extensions: 1233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4756864280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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