BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_H12_e96_16.seq (1488 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 42 0.002 SB_39109| Best HMM Match : PT (HMM E-Value=5) 33 0.59 SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6) 32 1.4 SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4 SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8 SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31) 31 2.4 SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 31 3.1 SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1 SB_31961| Best HMM Match : EGF (HMM E-Value=0) 30 5.5 SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13) 30 5.5 >SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) Length = 1467 Score = 41.5 bits (93), Expect = 0.002 Identities = 35/122 (28%), Positives = 50/122 (40%) Frame = +1 Query: 241 PSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPIPISIP 420 PSS + P SP+ SPT YSP + +Y +P YS P P + + P P Sbjct: 442 PSSPSSGYSPASPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYSPTS--PSYSP 493 Query: 421 AGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASD 600 S +P S + P P +P + S P + T PSY+ + P + Sbjct: 494 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTS 551 Query: 601 PS 606 PS Sbjct: 552 PS 553 Score = 36.7 bits (81), Expect = 0.048 Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 5/94 (5%) Frame = +1 Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAP- 402 S S P+S P SP+ SPT YSP + +Y +P YS H N+ P Sbjct: 551 SPSYSPTSPS--YSPTSPSYSPT---SPSYSP--TSPSYSPSSPSYSPSSPSFHHNLRPT 603 Query: 403 ---IPISIPAGASLTPVSLQH-VQLVPCMCPVAP 492 +P+SIP TP LQ Q P P P Sbjct: 604 PPPLPLSIPLLLQATPPHLQSTAQPRPTTVPPLP 637 >SB_39109| Best HMM Match : PT (HMM E-Value=5) Length = 231 Score = 33.1 bits (72), Expect = 0.59 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Frame = +1 Query: 538 VAQTYSQPS--YTVSQPVAVASDPSKNSNKQ*IIKCLXSSFRSYF*NPPMNVS 690 V Q S PS Y+ S + VAS PS+ +K +++ +S R YF +P + V+ Sbjct: 6 VLQVASTPSRQYSKSPVLQVASTPSRQYSKSPVLQVASNSSRQYFKSPVLQVA 58 >SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6) Length = 401 Score = 31.9 bits (69), Expect = 1.4 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Frame = +1 Query: 271 LSPNVSPTIRYQYMYS-PYESHKTYQLQAPQYSHPEVPIHQNMAPIPISIPAGASLTPVS 447 LSP +P YMY PY S TY +Q Q P H M P A + + Sbjct: 60 LSPGGTP-----YMYGGPYTSAPTYPVQVQQQRLDRSPCHVTMGPHAGQYIMQAPFSGIP 114 Query: 448 LQHVQLVPCMCPVAPEEA--EKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNS 615 + +PC+ VA + + ++Q + VSQ V A+ PS+ S Sbjct: 115 VAR-GAIPCIPNVALNGVVNQTTVASAARARAISQDQEEVVPAVSQGVVEATSPSQQS 171 >SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 884 Score = 31.9 bits (69), Expect = 1.4 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +1 Query: 418 PAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQP 582 P G +T LQ Q V + V+PE A+ + + GP A PS+ P Sbjct: 579 PQGVVMTATVLQQNQGVRSLANVSPELAQAIVQTDITGPITASELENPSHLSDNP 633 >SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 826 Score = 31.5 bits (68), Expect = 1.8 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = +1 Query: 196 SSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSP--YESHKTYQLQA----P 357 +S F + S PP+SQ+++ P +P S + Q Y P +S+ Q+ P Sbjct: 289 TSQQSFPRSAQQSYPPTSQQSY--PPTPQQSYPLTSQQSYLPTSQQSYPPTSQQSYPPSP 346 Query: 358 QYSHPEVPIHQNMAP 402 Q S+P+ I QN P Sbjct: 347 QQSYPQTSIQQNFPP 361 >SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31) Length = 306 Score = 31.1 bits (67), Expect = 2.4 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 10/123 (8%) Frame = +1 Query: 232 SAPPSSQKTWVQPLSP-----NVSPTIRYQYMYSPYESH---KTYQLQAPQYSHPEVPIH 387 SA P + T++ P + +P R Y + Y H + +L Y HP+ H Sbjct: 7 SATPLFRTTYLHPDDSEHEELSATPLFRTTYKHPIYSEHDELSSTRLFRTAYLHPDDSEH 66 Query: 388 QNMAPIPISIPAGASLTPVSLQHVQL--VPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQP 561 + ++ P+ A + P+ +H +L P + E+ A P TY P Sbjct: 67 EELSATPLF--RTAYMHPIYSEHEELSAAPLFRTTYLHPDDSEHEELSATPLFRTTYKHP 124 Query: 562 SYT 570 Y+ Sbjct: 125 IYS 127 >SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) Length = 269 Score = 30.7 bits (66), Expect = 3.1 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = +1 Query: 247 SQKTWVQPLSPNVSPTIRYQYMYSPY---ESHKTYQLQAPQYSHPEVPIHQN 393 SQ Q L+P S IR + + +PY + KTY+ +Y H ++P H + Sbjct: 5 SQAVRTQGLTPRYSSKIRTKGLNAPYITSTNTKTYRAIHQKYEHKDLPRHSS 56 >SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1933 Score = 30.7 bits (66), Expect = 3.1 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 265 QPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNM 396 QP SP+ PT P H +Y L P Y+ PE + Q M Sbjct: 1542 QPPSPSSIPTNMNFLQQIPLGVHPSYPLPPPPYATPEQYVEQQM 1585 >SB_31961| Best HMM Match : EGF (HMM E-Value=0) Length = 2813 Score = 29.9 bits (64), Expect = 5.5 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = +1 Query: 370 PEV-PIHQNMAP-IPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVA 543 PEV P + P +P +PA + P + V VP + P PE + E A P + Sbjct: 98 PEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAVPEIV 157 Query: 544 QTYSQPSYTVSQPVAVASDP 603 + V + VAV P Sbjct: 158 PAVPEVVPAVPEVVAVPEPP 177 >SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13) Length = 776 Score = 29.9 bits (64), Expect = 5.5 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = +1 Query: 190 VASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSH 369 +A+ AFF K + APP+ + T + + VS ++R MY YES L + + Sbjct: 248 IANDGAFFAKLST--APPNGEATCCRSMV-YVSSSVRA--MYLSYESLLNLGLLSTDFPT 302 Query: 370 PEVPIHQNMAPIP 408 V IH P P Sbjct: 303 NPVGIHDGRRPTP 315 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 31,213,042 Number of Sequences: 59808 Number of extensions: 564544 Number of successful extensions: 3747 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3729 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4812488570 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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