Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H12_e96_16.seq
         (1488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               42   0.002
SB_39109| Best HMM Match : PT (HMM E-Value=5)                          33   0.59 
SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)                32   1.4  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31)                     31   2.4  
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)                      31   3.1  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.1  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         30   5.5  
SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)                   30   5.5  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 35/122 (28%), Positives = 50/122 (40%)
 Frame = +1

Query: 241 PSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPIPISIP 420
           PSS  +   P SP+ SPT      YSP  +  +Y   +P YS P  P +   +  P   P
Sbjct: 442 PSSPSSGYSPASPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYSPTS--PSYSP 493

Query: 421 AGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASD 600
              S +P S  +    P   P +P  +      S   P  + T   PSY+ + P    + 
Sbjct: 494 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTS 551

Query: 601 PS 606
           PS
Sbjct: 552 PS 553



 Score = 36.7 bits (81), Expect = 0.048
 Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +1

Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAP- 402
           S S  P+S      P SP+ SPT      YSP  +  +Y   +P YS      H N+ P 
Sbjct: 551 SPSYSPTSPS--YSPTSPSYSPT---SPSYSP--TSPSYSPSSPSYSPSSPSFHHNLRPT 603

Query: 403 ---IPISIPAGASLTPVSLQH-VQLVPCMCPVAP 492
              +P+SIP     TP  LQ   Q  P   P  P
Sbjct: 604 PPPLPLSIPLLLQATPPHLQSTAQPRPTTVPPLP 637


>SB_39109| Best HMM Match : PT (HMM E-Value=5)
          Length = 231

 Score = 33.1 bits (72), Expect = 0.59
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 538 VAQTYSQPS--YTVSQPVAVASDPSKNSNKQ*IIKCLXSSFRSYF*NPPMNVS 690
           V Q  S PS  Y+ S  + VAS PS+  +K  +++   +S R YF +P + V+
Sbjct: 6   VLQVASTPSRQYSKSPVLQVASTPSRQYSKSPVLQVASNSSRQYFKSPVLQVA 58


>SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)
          Length = 401

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
 Frame = +1

Query: 271 LSPNVSPTIRYQYMYS-PYESHKTYQLQAPQYSHPEVPIHQNMAPIPISIPAGASLTPVS 447
           LSP  +P     YMY  PY S  TY +Q  Q      P H  M P        A  + + 
Sbjct: 60  LSPGGTP-----YMYGGPYTSAPTYPVQVQQQRLDRSPCHVTMGPHAGQYIMQAPFSGIP 114

Query: 448 LQHVQLVPCMCPVAPEEA--EKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNS 615
           +     +PC+  VA      +     +     ++Q   +    VSQ V  A+ PS+ S
Sbjct: 115 VAR-GAIPCIPNVALNGVVNQTTVASAARARAISQDQEEVVPAVSQGVVEATSPSQQS 171


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 418 PAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQP 582
           P G  +T   LQ  Q V  +  V+PE A+ + +    GP  A     PS+    P
Sbjct: 579 PQGVVMTATVLQQNQGVRSLANVSPELAQAIVQTDITGPITASELENPSHLSDNP 633


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = +1

Query: 196 SSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSP--YESHKTYQLQA----P 357
           +S   F +    S PP+SQ+++  P +P  S  +  Q  Y P   +S+     Q+    P
Sbjct: 289 TSQQSFPRSAQQSYPPTSQQSY--PPTPQQSYPLTSQQSYLPTSQQSYPPTSQQSYPPSP 346

Query: 358 QYSHPEVPIHQNMAP 402
           Q S+P+  I QN  P
Sbjct: 347 QQSYPQTSIQQNFPP 361


>SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31)
          Length = 306

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 10/123 (8%)
 Frame = +1

Query: 232 SAPPSSQKTWVQPLSP-----NVSPTIRYQYMYSPYESH---KTYQLQAPQYSHPEVPIH 387
           SA P  + T++ P        + +P  R  Y +  Y  H    + +L    Y HP+   H
Sbjct: 7   SATPLFRTTYLHPDDSEHEELSATPLFRTTYKHPIYSEHDELSSTRLFRTAYLHPDDSEH 66

Query: 388 QNMAPIPISIPAGASLTPVSLQHVQL--VPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQP 561
           + ++  P+     A + P+  +H +L   P          +   E+  A P    TY  P
Sbjct: 67  EELSATPLF--RTAYMHPIYSEHEELSAAPLFRTTYLHPDDSEHEELSATPLFRTTYKHP 124

Query: 562 SYT 570
            Y+
Sbjct: 125 IYS 127


>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
          Length = 269

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 247 SQKTWVQPLSPNVSPTIRYQYMYSPY---ESHKTYQLQAPQYSHPEVPIHQN 393
           SQ    Q L+P  S  IR + + +PY    + KTY+    +Y H ++P H +
Sbjct: 5   SQAVRTQGLTPRYSSKIRTKGLNAPYITSTNTKTYRAIHQKYEHKDLPRHSS 56


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 265  QPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNM 396
            QP SP+  PT        P   H +Y L  P Y+ PE  + Q M
Sbjct: 1542 QPPSPSSIPTNMNFLQQIPLGVHPSYPLPPPPYATPEQYVEQQM 1585


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 370 PEV-PIHQNMAP-IPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVA 543
           PEV P    + P +P  +PA   + P   + V  VP + P  PE    + E   A P + 
Sbjct: 98  PEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAVPEIV 157

Query: 544 QTYSQPSYTVSQPVAVASDP 603
               +    V + VAV   P
Sbjct: 158 PAVPEVVPAVPEVVAVPEPP 177


>SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)
          Length = 776

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +1

Query: 190 VASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSH 369
           +A+  AFF K  +  APP+ + T  + +   VS ++R   MY  YES     L +  +  
Sbjct: 248 IANDGAFFAKLST--APPNGEATCCRSMV-YVSSSVRA--MYLSYESLLNLGLLSTDFPT 302

Query: 370 PEVPIHQNMAPIP 408
             V IH    P P
Sbjct: 303 NPVGIHDGRRPTP 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,213,042
Number of Sequences: 59808
Number of extensions: 564544
Number of successful extensions: 3747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3729
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4812488570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)