Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H12_e96_16.seq
(1488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 40 0.006
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 40 0.006
Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical p... 38 0.024
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 33 0.52
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 31 2.8
U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical pr... 30 4.8
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 30 4.8
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 6.4
U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical pr... 29 8.5
AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical ... 29 8.5
AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical ... 29 8.5
AF047660-1|AAC04431.1| 900|Caenorhabditis elegans Osm-9 and cap... 29 8.5
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 39.5 bits (88), Expect = 0.006
Identities = 36/130 (27%), Positives = 53/130 (40%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
S S P+S P+SP+ SPT YSP + +Y +P YS P P + +
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYSPTS-- 1644
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPV 585
P P S +P S + P P +P + S P + T P+Y+ + P
Sbjct: 1645 PSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPT--SPTYSPTSPT 1702
Query: 586 AVASDPSKNS 615
+ PS S
Sbjct: 1703 YSPTSPSYES 1712
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 39.5 bits (88), Expect = 0.006
Identities = 36/130 (27%), Positives = 53/130 (40%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
S S P+S P+SP+ SPT YSP + +Y +P YS P P + +
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYSPTS-- 1651
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPV 585
P P S +P S + P P +P + S P + T P+Y+ + P
Sbjct: 1652 PSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPT--SPTYSPTSPT 1709
Query: 586 AVASDPSKNS 615
+ PS S
Sbjct: 1710 YSPTSPSYES 1719
>Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical
protein T21C9.9 protein.
Length = 391
Score = 37.5 bits (83), Expect = 0.024
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Frame = +1
Query: 256 TWVQPLSPNVSP---TIRY-QYMYSPYES-HKTYQLQAPQYSHPEVPIHQNMAPIPISIP 420
T+ + L+P P T Y QY P +S + YQL P+Y P+ P Q ++ P P
Sbjct: 58 TFYRDLTPFRQPYYQTASYPQYQQGPAQSLQQMYQLPNPRYIQPQAPRPQYISR-PAPRP 116
Query: 421 AGASLTPVSLQHVQLVPCMCPVA--PEEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVA 594
A A P +Q V PVA E + +G G + +T P T + PV
Sbjct: 117 APAPYQPPRVQERPYVQPAAPVAELAETRKNTLHDNGYGEEIERTTYTPVVTAA-PVYET 175
Query: 595 SDPS 606
P+
Sbjct: 176 DAPT 179
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 33.1 bits (72), Expect = 0.52
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQN--MA 399
+ + PPSS T VQ + T + S +T + AP+ + E P N +
Sbjct: 774 TSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTITAPETTSTEPPSSSNTPVQ 833
Query: 400 PIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ P S P S V APE S P T + P T ++
Sbjct: 834 TTTTTAPETTSTEPPS-SSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTE 892
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 893 PPSSSTTP 900
Score = 31.1 bits (67), Expect = 2.1
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
+ + PPSS T VQ + T + S +T AP+ + E P + +P+
Sbjct: 84 TSTEPPSSSTTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPP-SSSTSPV 142
Query: 406 PISIPAGASLTPVSLQHVQLVPCM--CPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ T P APE S P T + P T ++
Sbjct: 143 QTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTE 202
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 203 PPSSSTTP 210
Score = 31.1 bits (67), Expect = 2.1
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQN--MA 399
+ + PPSS T VQ + T + S +T AP+ + E P N +
Sbjct: 636 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQ 695
Query: 400 PIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ P S P S V APE S P T + P T ++
Sbjct: 696 TTTTTAPETTSTEPPS-SSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTE 754
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 755 PPSSSTTP 762
Score = 30.3 bits (65), Expect = 3.7
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
+ + PPSS T VQ + T + S +T + AP+ + E P + P+
Sbjct: 383 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPP-SSSTTPV 441
Query: 406 PISIPAGASLTPVSLQHVQLVPCM--CPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ T P APE S P T + P T ++
Sbjct: 442 QTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTE 501
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 502 PPSSSTTP 509
Score = 29.1 bits (62), Expect = 8.5
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
+ + PPSS T VQ + T + S +T AP+ + E P + P+
Sbjct: 199 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTESP-SSSTTPV 257
Query: 406 PISIPAGASLTPVSLQHVQLVPCM--CPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ T P APE S P T + P T ++
Sbjct: 258 QTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTE 317
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 318 PPSSSTTP 325
Score = 29.1 bits (62), Expect = 8.5
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
+ + PPSS T VQ + T + S +T AP+ + E P + P+
Sbjct: 222 TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPP-SSSTTPV 280
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCP--VAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ T P APE S P T + P T ++
Sbjct: 281 QTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTE 340
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 341 PPSSSTTP 348
Score = 29.1 bits (62), Expect = 8.5
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
+ + PPSS T VQ + T + S +T + AP+ + E P + P+
Sbjct: 268 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPP-SSSTTPV 326
Query: 406 PISIPAGASLTPVSLQHVQLVPCM--CPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ T P APE S P T + P T ++
Sbjct: 327 QTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAPETTSTE 386
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 387 PPSSSTTP 394
Score = 29.1 bits (62), Expect = 8.5
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 2/128 (1%)
Frame = +1
Query: 226 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
+ + PPSS T VQ + T + S +T AP+ + E P + P+
Sbjct: 498 TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPP-SSSTTPV 556
Query: 406 PISIPAGASLTPVSLQHVQLVPCM--CPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVSQ 579
+ T P APE S P T + P T ++
Sbjct: 557 QTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTE 616
Query: 580 PVAVASDP 603
P + ++ P
Sbjct: 617 PPSSSTTP 624
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 30.7 bits (66), Expect = 2.8
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Frame = +1
Query: 235 APPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVP---IHQNMAPI 405
AP + VQP+ P V P Q + P E + Q+P P VP I AP
Sbjct: 1472 APVAPVAQPVQPIQP-VQPVQSVQSLPQPAEIPRVVVPQSPGTPQPVVPQVSIVTPQAPQ 1530
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAP 492
P + AS P++ + P P
Sbjct: 1531 PTAAATSASTGPIAPEPTTAAPTTTETTP 1559
>U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical
protein ZK813.5 protein.
Length = 471
Score = 29.9 bits (64), Expect = 4.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +1
Query: 226 SDSAPPSSQKTWV-----QPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQ 390
SD +P SS T V + SP+ + + ++P S +Y+ P E +
Sbjct: 345 SDVSPASSVMTVVGGENGPRIKSEASPSYQLRPNWNPSPSVTSYESDPPSSVTQETNLPI 404
Query: 391 NMAPIPISIPAGASLTP 441
P P+S+PA A+ TP
Sbjct: 405 TSIP-PVSVPASANCTP 420
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 29.9 bits (64), Expect = 4.8
Identities = 20/81 (24%), Positives = 32/81 (39%)
Frame = +1
Query: 397 APIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQTYSQPSYTVS 576
AP+ P+ + P Q+VQ+ C AP + +Q A P VAQ Q
Sbjct: 54 APVQQQSPSCSCAQPQQTQNVQVQTTQC--APACQQSCTQQCQAAPSVAQCQPQCQQQCQ 111
Query: 577 QPVAVASDPSKNSNKQ*IIKC 639
A +P + +++C
Sbjct: 112 SQCAPMYNPPATTTPAPVVQC 132
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.5 bits (63), Expect = 6.4
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Frame = +1
Query: 316 SPYESHKTYQLQAPQYSHPEVPIHQNMAP-IPISIPAGASLTPVSLQHVQLVPCMCPVAP 492
+P + + AP + E P A P S PA A TP + P P AP
Sbjct: 670 TPAPAPAAEETPAPAQAAEETPAPAPAAEETPASAPA-AEETPAPAPAAEEAPAPAPAAP 728
Query: 493 EEAEKLQEQSGA-GPYVAQTY--SQPSYTV--SQPVAVASDPSKNSN 618
E E + A P V+ Y +Q + TV S A +SD S +N
Sbjct: 729 ETPAPAAEGAAAPAPIVSSGYDAAQSTDTVVASSAPATSSDASGATN 775
>U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical
protein T19H12.6 protein.
Length = 619
Score = 29.1 bits (62), Expect = 8.5
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = +1
Query: 160 MMSFLVILAIVASSDAFFLKWGSDSAPPS--SQKTW----VQPLSPNVSP-TIRYQYMYS 318
++ F+VILA+V AFFL S+ S S +T+ +Q +SP+ SP T R ++ S
Sbjct: 104 LVQFIVILALVLGLIAFFLTRSESSSTTSEYSTRTYQNFELQTISPSSSPLTFRRRFKTS 163
>AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3a protein.
Length = 426
Score = 29.1 bits (62), Expect = 8.5
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Frame = +1
Query: 241 PSSQKTWVQPLSPNVSPTIRY---QYMYSPYESHKTYQLQAPQYSHPEVPIHQNM--API 405
PS T P S N +P I Q M Q Q P +P + Q A +
Sbjct: 295 PSVPYTVTYPQSANSTPGIPQPLPQQMSRQQAPIYQNQQQMPPGYNPYLQQQQQQMAATV 354
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAP 492
P+ P+GA+ PVS Q+V V P
Sbjct: 355 PMPYPSGAAAVPVSAMAPQVVQYPTTVVP 383
>AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3b protein.
Length = 426
Score = 29.1 bits (62), Expect = 8.5
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Frame = +1
Query: 241 PSSQKTWVQPLSPNVSPTIRY---QYMYSPYESHKTYQLQAPQYSHPEVPIHQNM--API 405
PS T P S N +P I Q M Q Q P +P + Q A +
Sbjct: 295 PSVPYTVTYPQSANSTPGIPQPLPQQMSRQQAPIYQNQQQMPPGYNPYLQQQQQQMAATV 354
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAP 492
P+ P+GA+ PVS Q+V V P
Sbjct: 355 PMPYPSGAAAVPVSAMAPQVVQYPTTVVP 383
>AF047660-1|AAC04431.1| 900|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 2 protein.
Length = 900
Score = 29.1 bits (62), Expect = 8.5
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 382 IHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEA-EKLQEQSGAGPYVAQTYSQ 558
IH+NMA +++ GASL V+ Q + + +A +E +++ E G + S
Sbjct: 307 IHENMAMFKLALECGASLRTVNKQSLSPLTLAAKLAKKEMFDEILELEGDSVWAYGDASS 366
Query: 559 PSYTVSQ 579
+Y +++
Sbjct: 367 TAYPLAK 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,185,556
Number of Sequences: 27780
Number of extensions: 440598
Number of successful extensions: 1121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4277144658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -