Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H12_e96_16.seq
         (1488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.96 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   1.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   3.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   6.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 0.96
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 283 VSPTIRYQYMYSPYESHKTYQLQAPQYSHPE 375
           +SP     Y YSP  SH  Y +   Q+S+P+
Sbjct: 261 LSPVTNNLY-YSPLLSHGLYYVDTEQFSNPQ 290


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +1

Query: 190 VASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQY 363
           + S  +F   +   +  P SQ T +Q L P VSP       Y  Y         +PQY
Sbjct: 386 IGSGGSFPSLYPMATTSPQSQST-IQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQY 442



 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 230 SDPHFKKKASDDATIAKIT 174
           SDP F KKA  D  I K++
Sbjct: 211 SDPIFDKKAMSDLVICKLS 229


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 230 SDPHFKKKASDDATIAKIT 174
           SDP F KKA  D  I K++
Sbjct: 211 SDPIFDKKAMSDLVICKLS 229


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 414 YSCRSEPYPGIF 449
           Y C  EPYP IF
Sbjct: 215 YPCCDEPYPDIF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,886
Number of Sequences: 438
Number of extensions: 5690
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51917250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)