Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H12_e96_16.seq
(1488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family... 37 0.039
At1g22610.1 68414.m02823 C2 domain-containing protein contains I... 33 0.36
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 33 0.48
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 31 1.9
At5g61110.1 68418.m07667 hypothetical protein 31 2.6
At1g30570.1 68414.m03740 protein kinase family protein contains ... 31 2.6
At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein c... 29 5.9
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 29 5.9
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 29 5.9
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 29 5.9
At5g61620.1 68418.m07732 myb family transcription factor contain... 29 7.8
>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
protein similar to proline-rich protein precursor
GB:AAC34889 [Glycine max]
Length = 388
Score = 36.7 bits (81), Expect = 0.039
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Frame = +1
Query: 262 VQPLSP-NVSPTIRYQYMYSPYESHKTYQLQA-PQYSHPEVPIHQNMAPIPISIPAGASL 435
+QP +P PT + M P S Q+ P++SHP+ H N A +S P + +
Sbjct: 116 MQPQAPIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSHPQRQGHLNPAVTSMSHPQSSQV 175
Query: 436 T---PVSLQHV--QLVPCMCPVAPEEAEKLQEQ---SGAGPYVAQTYSQP 561
P + H Q P P + +LQ+Q SG GP+VAQ S+P
Sbjct: 176 QNAPPPASHHPTSQQPPFHHLDIPASSTQLQQQPMHSGGGPHVAQQQSRP 225
>At1g22610.1 68414.m02823 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1029
Score = 33.5 bits (73), Expect = 0.36
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 223 GSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSP-YESHKTYQLQAPQYSHPEVPIHQNMA 399
G APP SQ P PN P R +M +P + Q+Q P+ +PE + +
Sbjct: 206 GGGGAPPMSQAKQAYPPPPN-QPEFRSDFMRAPGPPTGAVMQMQPPRQQNPEFQLIETSP 264
Query: 400 PI 405
P+
Sbjct: 265 PL 266
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats, Pfam:PF00560;
contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 33.1 bits (72), Expect = 0.48
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +1
Query: 241 PSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPIPISIP 420
PSS +++ +PN+SP + +P S +T Q+ P + P + AP PI P
Sbjct: 705 PSSSESYQ---APNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSP---SQAPTPILEP 758
Query: 421 AGASLTPVSLQHVQLVPCMCPV-APEEAEKLQ--EQSGAGPYVAQTYSQPSYTVSQP 582
A TP S P PV +PE++E+++ E + P + S PS S P
Sbjct: 759 VHAP-TPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPS-SSPSTDTSIP 813
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 31.1 bits (67), Expect = 1.9
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Frame = +1
Query: 229 DSAPPSSQKTWVQPLSPNVS-PTIRYQYMYSPYESHKTYQLQAPQYSHPEVPIHQNMAPI 405
D APP + +PLSP S ++ P + ++ + +VP+ N+ P+
Sbjct: 363 DEAPPKEKNVKPRPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQVPVEANVVPV 422
Query: 406 PISIPAGASLTPVSLQHVQLVPCMCPVAP-EEAEKLQEQSGAGPYVAQTYSQPSYTVSQP 582
P S +++ V ++ V+ P++P E L+ S P + T S + P
Sbjct: 423 PDST---SNVPVVEVKQVE-EKKERPLSPYARYENLKPPSSPSPTASSTRKSDSLS---P 475
Query: 583 VAVASDPSKNS 615
SD K+S
Sbjct: 476 GPTDSDTDKSS 486
>At5g61110.1 68418.m07667 hypothetical protein
Length = 113
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 493 EEAEKLQEQSGAGPYVAQTYSQPSYTVSQPVAVASDPSKNSNKQ 624
E + S +G ++ T+ QP + PVAV D S + N+Q
Sbjct: 61 EVVNQTMTSSDSGNQISATHQQPPQAHASPVAVPMDTSSSDNQQ 104
>At1g30570.1 68414.m03740 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 849
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 193 ASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIR 300
A S +F + GS++ +TWV LSPN S T++
Sbjct: 28 AQSKSFLVDCGSNATTEVDGRTWVGDLSPNKSVTLQ 63
>At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein
contais aldehyde dehydrogenase (NADP) family protein
domain, Pfam:PF00171
Length = 484
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 297 PLSIYVFAI*IAQNISTASTAILSSRSSDPPKYGSYTYQYSCRSEPYPGI 446
PL+IY F N T ILS SS + QY C + P+ G+
Sbjct: 373 PLAIYAFT-----NDENLKTRILSETSSGSVTFNDVMIQYMCDALPFGGV 417
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 166 SFLVILAIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESH 333
+ +V +A+ S + +W + S+ PS+ K WV ++ ++ + Y + PYE +
Sbjct: 246 NMIVCVAMGVSQLFLWARWAAVSSHPSNWKLWVVVIAGGLAMLLEI-YDFPPYEGY 300
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 166 SFLVILAIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESH 333
+ +V +A+ S + +W + S+ PS+ K WV ++ ++ + Y + PYE +
Sbjct: 246 NMIVCVAMGVSQLFLWARWAAVSSHPSNWKLWVVVIAGGLAMLLEI-YDFPPYEGY 300
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 166 SFLVILAIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESH 333
+ +V +A+ S + +W + S+ PS+ K WV ++ ++ + Y + PYE +
Sbjct: 246 NMIVCVAMGVSQLFLWARWAAVSSHPSNWKLWVVVIAGGLAMLLEI-YDFPPYEGY 300
>At5g61620.1 68418.m07732 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 317
Score = 29.1 bits (62), Expect = 7.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 307 YMYSPYESHKTYQLQAPQYSHPEVPI---HQNMAPIPISIPAGASLTPVS 447
Y + P H Y + Y++P+VP+ H + P+P IP G L+ S
Sbjct: 235 YNFPPIMYHPNYPMY---YANPQVPVRFVHPSGIPVPRHIPIGLPLSQPS 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,419
Number of Sequences: 28952
Number of extensions: 392994
Number of successful extensions: 1017
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3961461312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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