Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H11_e88_15.seq
         (1515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.27 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.63 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   7.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 393 LQYVAKTIWQS-ISLLLTLFISGKCHYLLCQNPPAIPTLPICSVYCLVARVQLIIDWHNY 569
           + +++KT+ +S I +++ + ++  C++++  N         C +  LVA V +     ++
Sbjct: 489 IYFISKTLAESPIFIIIPVILTSVCYFMIGLNSQGFRFYIACGIMILVANVAI-----SF 543

Query: 570 GYSLMAMS 593
           GY +  +S
Sbjct: 544 GYLISCVS 551


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.63
 Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 393 LQYVAKTIWQS-ISLLLTLFISGKCHYLLCQNPPAIPTLPICSVYCLVARVQLIIDWHNY 569
           + +++KT+ +S I +++ + ++  C++++  N         C +  LVA V +     ++
Sbjct: 489 IYFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGFRFYIACGIMILVANVAI-----SF 543

Query: 570 GYSLMAMS 593
           GY +  +S
Sbjct: 544 GYLISCVS 551


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 810 QSLKKPKQVFLSKVKGMEYFLA 745
           +S+K  KQ F+ K   + +FLA
Sbjct: 21  RSIKLEKQTFIQKFYAVAFFLA 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,864
Number of Sequences: 336
Number of extensions: 6049
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45476700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)