Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H11_e88_15.seq
         (1515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...   114   3e-26
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    31   0.55 
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    27   9.0  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   9.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   9.0  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score =  114 bits (275), Expect = 3e-26
 Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 7/203 (3%)
 Frame = +3

Query: 168 NVMEENSRKSVKVVVLADIGRSPRMQYHALSLANNGFKVNIITYVETTPLTEITEN-PNI 344
           N+ +   +K + V+VL DI RSPRMQYHA+S A  G+KV+++ Y        + E+  NI
Sbjct: 17  NLKKRTDKKRIIVLVLGDIARSPRMQYHAVSFAKLGWKVDLLGYQHPGSSVGLFESHENI 76

Query: 345 QISKLHPLD-YNKGPQLLQYV----AKTIWQSISLLLTLFISGKCHYLLCQNPPAIPTLP 509
           +   +  L  Y +    LQ++     K + Q ++L   LF+     +L  QNPP IP   
Sbjct: 77  RFYPIPSLPAYLQPKNRLQFLFLGPLKVLHQFLALNWALFVRKPASFLFIQNPPCIPVFF 136

Query: 510 ICSVYCLVARVQLIIDWHNYGYSLMAMSLHRDHLLVLXATHIEKLFGQYAHHNFLCHLCM 689
           I     ++   + IIDWHN+GYS++A+ L + H  V      EK   + A+ +      M
Sbjct: 137 IAQCLHILRGTKFIIDWHNFGYSILALKLGKQHTFVKLLKIYEKYMARGAYAHLTVSKRM 196

Query: 690 KEDLLQNWNI-VATTLYDRPPKN 755
           K D+LQ W +      YDRPP +
Sbjct: 197 K-DVLQTWGMNPCYVCYDRPPNH 218


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 168 LEDGKRITDDYVFIEKNHIILAVEVVFKQI 79
           ++ G  IT+DY+ IEKNH  L  E V+  I
Sbjct: 480 IQSGSFITEDYITIEKNHSHLNSEKVYSFI 509


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 320 RNNRKPQYSNFKTASIRLQQRPSITSICSENYMAKHKFAFNLIY--KWKMPLFAVS 481
           R++  PQ  +F    + +     +TS  S    A   F+F ++Y   WK PL+ +S
Sbjct: 63  RSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLYRIS 118


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 642 LFGQYAHHNFLCHLCMKEDLLQNWNIVATTL 734
           LFG +   + +  LC+ + L+Q++ ++  TL
Sbjct: 267 LFGHFCPRHLVNELCILQSLVQSYGVIMPTL 297


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 639 KLFGQYAHHNFLCHLCMK 692
           KL  +  HH F C LC+K
Sbjct: 189 KLHAKVKHHKFFCDLCVK 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,841,231
Number of Sequences: 5004
Number of extensions: 90720
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 848370472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)