Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H11_e88_15.seq
         (1515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420...   119   7e-27
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877...   112   8e-25
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    32   1.0  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    30   4.2  

>03_01_0570 -
           4205739-4205776,4205846-4205897,4205939-4206067,
           4206183-4206258,4206360-4206412,4206494-4206555,
           4206624-4206734,4206813-4206979,4207089-4207268,
           4207598-4207687,4207773-4207921,4208367-4208501,
           4208575-4208630,4208790-4208823,4209409-4209519
          Length = 480

 Score =  119 bits (286), Expect = 7e-27
 Identities = 71/187 (37%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
 Frame = +3

Query: 174 MEENSRKSVKVVVLADIGRSPRMQYHALSLANN-GFKVNIITYVETTPLTEITENPNIQI 350
           +E   RK   VVVL DIGRSPRMQYH+LSLAN  G +V+I+    + P   + ENP+I I
Sbjct: 5   LEAGRRKRAAVVVLGDIGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHI 64

Query: 351 SKLHPLDYN---KGPQLLQYVAKTIWQSISLLLTL-FISGKCHYLLCQNPPAIPTLPICS 518
            ++  +      K    L  + K   Q I L+  L F   +    + QNPP++PTL    
Sbjct: 65  HEMKSVQLTGILKISGALTLLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVK 124

Query: 519 VYCLVARVQLIIDWHNYGYSLMAMSLHRDHLLVLXATHIEKLFGQYAHHNFLCHLCMKED 698
           +   +   + I+DWHN+GY+L+ +S  R H++V      EK FG+ A   F     MK +
Sbjct: 125 LASWLRGAKFIVDWHNFGYTLLGLSHGRSHIIVKIYFWFEKHFGRMADGAFCVTKAMKHE 184

Query: 699 LLQNWNI 719
           L Q W I
Sbjct: 185 LDQKWGI 191


>06_03_0492 -
           21386587-21386700,21387471-21387599,21387715-21387790,
           21387898-21387950,21388034-21388095,21388164-21388274,
           21388361-21388527,21388804-21388869,21389416-21389505,
           21389592-21389740,21390182-21390316,21390399-21390454,
           21390630-21390663,21391908-21392018
          Length = 450

 Score =  112 bits (269), Expect = 8e-25
 Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
 Frame = +3

Query: 174 MEENSRKSVKVVVLADIGRSPRMQYHALSLANNG-FKVNIITYVETTPLTEITENPNIQI 350
           +E   R+    VVL DIGRSPRMQYH+LSLAN G  +V+I+    + P   + ENP I I
Sbjct: 5   VEAGRRRRAAAVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHI 64

Query: 351 SKLHPLDY---NKGPQLLQYVAKTIWQSISLLLTL-FISGKCHYLLCQNPPAIPTLPICS 518
            ++  +     +K    L  + K   Q I L+  L F   +    + QNPP++PTL    
Sbjct: 65  HEMKSVQLTGISKISGALSMLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVK 124

Query: 519 VYCLVARVQLIIDWHNYGYSLMAMSLHRDHLLVLXATHIEKLFGQYAHHNFLCHLCMKED 698
           +   +   + I+DWHN+GY+L+ +S  R H++V      EK FG+ A   F     MK +
Sbjct: 125 LASGLRGAKSIVDWHNFGYTLLGLSHGRSHIIVKIYFWFEKHFGRMADGAFCVTKAMKHE 184

Query: 699 LLQNWNIVA 725
           L + W I A
Sbjct: 185 LDKKWGINA 193


>05_04_0149 -
           18441561-18442082,18442723-18442861,18443295-18443352,
           18443630-18443664,18444528-18444886,18445304-18445450,
           18445849-18447954,18448300-18448494,18448629-18448709,
           18448758-18448874,18449281-18449370,18449466-18449552,
           18450293-18450315,18450675-18450804
          Length = 1362

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 228 YLYRLKLQLSHFFLNFLPLRLEDGKRITDDYVFIEK 121
           Y+++L++ LSH  + F    L DGKR T +Y  I K
Sbjct: 114 YIWQLQIDLSHHVVFFFLHSLSDGKRFTREYSTIFK 149


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 609 SDHDVMTSPLKNIHSYANL*LTGLEQPSNTHC 514
           SD + + +P  N+ S+ NL L G+E  + +HC
Sbjct: 869 SDEEAVAAPDSNMQSHLNLALLGVEDDTLSHC 900


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,821,128
Number of Sequences: 37544
Number of extensions: 625100
Number of successful extensions: 1058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)