Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H11_e88_15.seq
         (1515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...   117   3e-26
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    31   2.1  

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score =  117 bits (281), Expect = 3e-26
 Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 18/207 (8%)
 Frame = +3

Query: 183 NSRKSVKVVVLADIGRSPRMQYHALSLANNGFKVNIITYVETTPLTEITENPNIQISKL- 359
           + R    VVVL D+GRSPRM  HA  LA+ GF V +I + ++ P  +I  +P I+I  + 
Sbjct: 10  DERSEAAVVVLGDVGRSPRMCNHAKMLADEGFDVKLIGFFDSIPGEQIMNHPRIKIVGIP 69

Query: 360 HPLDY-NKGPQLLQYVAKTIWQSISLLLTLFISGKC---HYLLCQNPPAIPTLPICSVYC 527
            P D+ +  P  +Q   K  W  I+L L L           +L QNPPA+PT+ +C ++ 
Sbjct: 70  PPPDFMDSLPAFVQLPLKLFWNFITLFLALAFQTSAFNLRIILMQNPPALPTMIVCFMFS 129

Query: 528 LVARVQLIIDWHNYGYSLM--AMSLHRDHL-----------LVLXATHIEKLFGQYAHHN 668
           +    +  IDWHNY YS++     L  D +           +V     +E L G+ + +N
Sbjct: 130 IFKFAKFSIDWHNYMYSILQNKYQLTDDQVFGNDKKTKKAQIVRCVGFLEGLCGKLSDYN 189

Query: 669 FLCHLCMKEDLLQNWNIVATTLYDRPP 749
                 M+ DL+  W I A+T YDRPP
Sbjct: 190 LCVTNAMRRDLMDRWGIRASTFYDRPP 216


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 94   NFDGKNNMIFFNEHVIISDSLTVL 165
            + DGKNN +F NE V + + LT+L
Sbjct: 1433 DMDGKNNRVFLNEDVHLPNGLTIL 1456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,737,724
Number of Sequences: 27780
Number of extensions: 560633
Number of successful extensions: 1078
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)