Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H11_e88_15.seq
         (1515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.98 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   5.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   6.9  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   9.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.98
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 461 MPLFAVSEPTSHSNITHMQCVLLGCSSP 544
           +PL A+ EP+ +  + H Q   + CS P
Sbjct: 368 IPLSAIPEPSKNPAMGHWQMSCVACSPP 395


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 213 KLQLSHFFLNFLPLRLEDGKRITDDYVFIEKNHIILAVEVVFKQILVPN 67
           KL L    +  LP++L+DG  I DD V  E   +I    +  K+I VP+
Sbjct: 329 KLDLDSIDMMQLPIQLDDGIDILDD-VKCEDERVI---SIPDKEITVPS 373


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 261 EIMHDIAYVDFYLYRLKLQLSHFFLNFLP 175
           EI HD+ Y+  Y Y L +++  F +   P
Sbjct: 527 EIKHDMVYLQKYFY-LFMEMDRFAVTLRP 554


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 261 EIMHDIAYVDFYLYRLKLQLSHFFLNFLP 175
           EI HD+ Y+  Y Y L +++  F +   P
Sbjct: 527 EIKHDMVYLQKYFY-LFMEMDRFAVTLRP 554


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 489 PAIPTLPICSVYCL 530
           P IP LP+  VYC+
Sbjct: 783 PRIPILPMIPVYCV 796


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 305 NYTAHRNNRKPQYSNFKTASIRLQQRPSITSICSENY 415
           NY  + NN KP Y N     I ++Q P    I   N+
Sbjct: 323 NYNNYNNNYKPLYYNI----INIEQIPVPVPIYCGNF 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,716
Number of Sequences: 438
Number of extensions: 7812
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52993875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)