Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H10_e80_16.seq
         (1533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   1.7  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    28   3.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   9.1  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 111 SXXPPPPPPAPXXPXS 64
           S  PPPPPP P  P S
Sbjct: 237 SSTPPPPPPRPSQPTS 252


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 362 ISCNYEKRIGKKYCEECCSKVHKVGRHEGLVRAQWRPV 249
           + C  + R+  + C    S+ + + RH+  + A+ RPV
Sbjct: 572 VRCTLQNRVTGEICNTVFSRTYDLIRHQDTIHAKTRPV 609


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -1

Query: 102 PPPPPPAPXXPXSCXXRGXPXNY 34
           PPPPPP P           P +Y
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDY 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,390
Number of Sequences: 5004
Number of extensions: 55911
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 860263516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)