Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H10_e80_16.seq
(1533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 1.6
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 25 2.3
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 25 2.3
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 31 2.4
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 25 2.9
12_02_1070 - 25814741-25815850 25 3.0
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381... 25 3.1
08_02_0937 + 22801526-22802461 25 3.1
08_01_0111 + 850047-850218,850366-850649,851017-851763 25 3.9
07_03_1771 - 29404972-29405175,29405282-29405677 25 4.2
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326 25 5.1
07_01_0321 - 2255342-2255604,2256506-2256779,2256886-2257068 30 5.6
01_05_0423 + 22032940-22033695 30 5.6
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 25 7.9
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 29 9.8
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 26.6 bits (56), Expect(2) = 7.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 132 LHMS*XXSXXPPPPPPAPXXP 70
L S S PPPPPP P P
Sbjct: 575 LPQSNYASSQPPPPPPPPPLP 595
Score = 25.8 bits (54), Expect(2) = 1.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 636 PPPPPPPPSLP 646
Score = 25.0 bits (52), Expect(2) = 3.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 618 PPPPPPPPPLP 628
Score = 24.2 bits (50), Expect(2) = 1.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 631 SVLPPPPPPPP 641
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 616 SVPPPPPPPPP 626
Score = 21.0 bits (42), Expect(2) = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 96 PPPPAPXXPXSCXXRGXP 43
PPPP P P S R P
Sbjct: 634 PPPPPPPPPPSLPNRLVP 651
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 25.0 bits (52), Expect(2) = 2.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 251 PPPPPPPPGPP 261
Score = 24.6 bits (51), Expect(2) = 2.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 201 STLPPPPPPPP 211
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 25.4 bits (53), Expect(2) = 2.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 158 PPPPPPPPPAP 168
Score = 24.2 bits (50), Expect(2) = 2.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 156 STPPPPPPPPP 166
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 149 HAHHGPARRAQVRWLLRLGGVRETRGDSAPAGPRPVATAPGRD 277
H HH ++ Q +WL R RE G + P+ VA +P D
Sbjct: 59 HNHHQQHQQQQQQWLRRNQIAREAAGTDRNSEPKAVAQSPAVD 101
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 25.0 bits (52), Expect(2) = 2.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 7 PPPPPPPPPRP 17
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 3 SRQPPPPPPPP 13
>12_02_1070 - 25814741-25815850
Length = 369
Score = 24.6 bits (51), Expect(2) = 3.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 147 ELSTALHMS*XXSXXPPPPPPAP 79
+L + +S + PPPPPP P
Sbjct: 224 QLPPKIRLSPTQAPPPPPPPPPP 246
Score = 24.6 bits (51), Expect(2) = 3.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 238 PPPPPPPPPPP 248
>04_04_0760 -
27837170-27837328,27837441-27837504,27837812-27838160,
27838906-27838960,27839489-27839821
Length = 319
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 102 PPPPPPAPXXPXS 64
PPPPPP+ P S
Sbjct: 11 PPPPPPSESTPTS 23
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
+ PPPPPP P
Sbjct: 6 TTTPPPPPPPP 16
>08_02_0937 + 22801526-22802461
Length = 311
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 99 PPPPPAPXXPXSC 61
PPPPP P P C
Sbjct: 33 PPPPPPPSRPLFC 45
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPAP
Sbjct: 2 SASSPPPPPAP 12
>08_01_0111 + 850047-850218,850366-850649,851017-851763
Length = 400
Score = 25.0 bits (52), Expect(2) = 3.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 377 SAAPPPPPPPP 387
Score = 23.8 bits (49), Expect(2) = 3.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP+ P
Sbjct: 382 PPPPPPSSATP 392
>07_03_1771 - 29404972-29405175,29405282-29405677
Length = 199
Score = 25.0 bits (52), Expect(2) = 4.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 18 PPPPPPPPLPP 28
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 13 SPLPPPPPPPP 23
>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
Length = 386
Score = 25.0 bits (52), Expect(2) = 5.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP+P
Sbjct: 286 SDKPPPPPPSP 296
Score = 23.4 bits (48), Expect(2) = 5.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 102 PPPPPPAPXXPXS 64
PPPPP P P S
Sbjct: 290 PPPPPSPPPTPVS 302
>07_01_0321 - 2255342-2255604,2256506-2256779,2256886-2257068
Length = 239
Score = 29.9 bits (64), Expect = 5.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 102 PPPPPPAPXXPXSCXXRGXPXN 37
PPPPPP P P + P N
Sbjct: 38 PPPPPPPPTDPAASTTPNAPRN 59
>01_05_0423 + 22032940-22033695
Length = 251
Score = 29.9 bits (64), Expect = 5.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 168 AGP*CACELSTALHMS*XXSXXPPPPPPAPXXPXSC 61
AGP + S + S PPPPPP P P +C
Sbjct: 6 AGPSSSGHSSPTSNTSTTPPPQPPPPPPPPPHPQAC 41
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 25.0 bits (52), Expect(2) = 7.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 129 HMS*XXSXXPPPPPPAP 79
H+ + PPPPPP P
Sbjct: 122 HLPSSAAAPPPPPPPPP 138
Score = 22.6 bits (46), Expect(2) = 7.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P
Sbjct: 132 PPPPPPPEESP 142
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 29.1 bits (62), Expect = 9.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 111 SXXPPPPPPAPXXPXSCXXRGXP 43
S PPPPPP P + RG P
Sbjct: 128 SSEPPPPPPPRTLPSAGAGRGVP 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,151,532
Number of Sequences: 37544
Number of extensions: 396668
Number of successful extensions: 5211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4117
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4930895900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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