Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H10_e80_16.seq
         (1533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   0.91 
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              27   6.5  
SB_37611| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-13)                 29   7.5  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 29   9.9  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  

>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 25.8 bits (54), Expect(2) = 0.91
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 111 SXXPPPPPPAP 79
           S  PPPPPP+P
Sbjct: 47  SSSPPPPPPSP 57



 Score = 25.4 bits (53), Expect(2) = 0.91
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 102 PPPPPPAPXXP 70
           PPPPPP P  P
Sbjct: 85  PPPPPPLPAPP 95


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 102 PPPPPPAPXXPXSCXXRGXPXNY 34
           PPPPPP P  P  C     P  Y
Sbjct: 142 PPPPPPPPSPPPPCHPPALPSTY 164


>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 27.1 bits (57), Expect(2) = 6.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 102 PPPPPPAPXXP 70
           PPPPPPAP  P
Sbjct: 425 PPPPPPAPLPP 435



 Score = 21.0 bits (42), Expect(2) = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 111 SXXPPPPPPAP 79
           S   PPPPP P
Sbjct: 420 SLVQPPPPPPP 430


>SB_37611| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-13)
          Length = 403

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = -1

Query: 540 EPSL*LYTIIKH*FVNNGIYVIRMYFNFPFIICVLILYYSIPIWLKLDHVLQSLGRHYGY 361
           EP+L +Y ++ +  + +   V RM FN  F+I   + +YS+    K+     S+G+    
Sbjct: 172 EPAL-VYRLVYYSVIGDFNMVARMLFNVEFLIMAFVTWYSLRSQNKVYERNLSMGKDVQG 230

Query: 360 LVQL*KKNRKEI 325
             Q+  + R E+
Sbjct: 231 QRQVNTRRRAEV 242


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 121 RHVQGGGQLXXXXXXXXXXXXQVAPPTGRSPRDARRLRPCGTTTGRHCARTRPSCR 288
           R V   G++            +V    GR  RDA R++ CG T G+ C      CR
Sbjct: 187 RVVSDAGRVMQDAGRVVRDAGRVMQDAGRVVRDAGRVKGCG-TCGKGCGTCGKRCR 241


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 135 RWTTRMRITD----LRVVRKSG-GSSDWAESERREETPPLRDHDRSPL 263
           RW T +R+ D    L  +R SG G         R+E  PLRDH  SP+
Sbjct: 164 RWLTELRVLDCSRWLTELRGSGYGGMLSLFMADRDEQAPLRDHTSSPV 211


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 102  PPPPPPAPXXPXSC 61
            PPPPPPAP  P  C
Sbjct: 1456 PPPPPPAPPCPPPC 1469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,074,043
Number of Sequences: 59808
Number of extensions: 434884
Number of successful extensions: 1912
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4988555225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)