Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H10_e80_16.seq
         (1533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   2.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   2.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   3.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   3.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   9.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   9.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   9.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 102 PPPPPPAPXXPXS 64
           PPPPPP+   P S
Sbjct: 343 PPPPPPSSSGPDS 355


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 189 GSSDWAESERREETPPLRDHDRSPLRPDETF 281
           GS  W + +       LR+HD S  +   TF
Sbjct: 407 GSKSWTQEDMDAALEALRNHDMSLTKASATF 437


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 271 TRPSCRPTLCTFEQHSSQYFFPILFS*LHEISIMST 378
           T+P C P L TF+  +SQ    +     H++++ +T
Sbjct: 146 TQPMCSPKLLTFDLTTSQLLKQVEIP--HDVAVNAT 179


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 271 TRPSCRPTLCTFEQHSSQYFFPILFS*LHEISIMST 378
           T+P C P L TF+  +SQ    +     H++++ +T
Sbjct: 146 TQPMCSPKLLTFDLTTSQLLKQVEIP--HDVAVNAT 179


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 271 TRPSCRPTLCTFEQHSSQYFFPILFS*LHEISIMST 378
           T+P C P L TF+  +SQ    +     H++++ +T
Sbjct: 146 TQPMCSPKLLTFDLTTSQLLKQVEIP--HDVAVNAT 179


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 102  PPPPPPAP 79
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 PCGTTTGRHCARTRPSCRPTLCT 303
           P G TTG +   T  +C P  CT
Sbjct: 414 PTGATTGPNEIVTCTNCGPNPCT 436


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 PCGTTTGRHCARTRPSCRPTLCT 303
           P G TTG +   T  +C P  CT
Sbjct: 400 PTGATTGPNEIVTCTNCGPNPCT 422


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 PCGTTTGRHCARTRPSCRPTLCT 303
           P G TTG +   T  +C P  CT
Sbjct: 434 PTGATTGPNEIVTCTNCGPNPCT 456


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 PCGTTTGRHCARTRPSCRPTLCT 303
           P G TTG +   T  +C P  CT
Sbjct: 383 PTGATTGPNEIVTCTNCGPNPCT 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,589
Number of Sequences: 438
Number of extensions: 4941
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53711625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)