Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H10_e80_16.seq
(1533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ... 27 0.41
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 23 0.66
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 26 1.1
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 25 1.2
At1g63480.1 68414.m07178 DNA-binding family protein contains a A... 31 1.5
At1g20860.1 68414.m02613 phosphate transporter family protein si... 27 3.2
At1g61080.1 68414.m06877 proline-rich family protein 25 3.9
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 29 6.2
At4g18570.1 68417.m02749 proline-rich family protein common fami... 25 6.8
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 24 9.2
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 24 9.3
>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
ZF-HD homeobox protein-related predicted proteins,
Arabidopsis thaliana
Length = 334
Score = 27.1 bits (57), Expect(2) = 0.41
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 102 PPPPPPAPXXPXS 64
PPPPPP P P S
Sbjct: 137 PPPPPPPPRSPNS 149
Score = 25.0 bits (52), Expect(2) = 0.41
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 141 STALHMS*XXSXXPPPPPPAP 79
STA+ PPPPPP P
Sbjct: 122 STAVEYQPHHRHHPPPPPPPP 142
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 23.4 bits (48), Expect(3) = 0.66
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 102 PPPPPPAP 79
PPPPPP P
Sbjct: 46 PPPPPPPP 53
Score = 23.4 bits (48), Expect(3) = 0.66
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 99 PPPPPAPXXP 70
PPPPP P P
Sbjct: 72 PPPPPPPSAP 81
Score = 22.6 bits (46), Expect(3) = 0.66
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 111 SXXPPPPPPA 82
S PPPPPP+
Sbjct: 19 SLAPPPPPPS 28
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 26.2 bits (55), Expect(2) = 1.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 138 TALHMS*XXSXXPPPPPPAP 79
T LH + PPPPPP P
Sbjct: 562 TTLHQPINKTPPPPPPPPPP 581
Score = 24.6 bits (51), Expect(2) = 3.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 102 PPPPPPAPXXPXSCXXRGXP 43
PPPPPP P G P
Sbjct: 658 PPPPPPPPTSHSGSIRVGPP 677
Score = 24.2 bits (50), Expect(2) = 1.1
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 102 PPPPPPAPXXPXSCXXRGXP 43
PPPPPP P S P
Sbjct: 599 PPPPPPPPPSSRSIPSPSAP 618
Score = 24.2 bits (50), Expect(2) = 3.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 616 SAPPPPPPPPP 626
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 25.4 bits (53), Expect(2) = 1.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 141 STALHMS*XXSXXPPPPPPAP 79
+TA H S PPPPPP P
Sbjct: 140 TTAGHHHHRRSPPPPPPPPPP 160
Score = 25.0 bits (52), Expect(2) = 1.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPPA P
Sbjct: 180 PPPPPPATTTP 190
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 144 LSTALHMS*XXSXXPPPPPPAP 79
++T H S PPPPPP P
Sbjct: 108 ITTTGHHHHRRSPPPPPPPPPP 129
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 151 PPPPPPPPPPP 161
>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 361
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 102 PPPPPPAPXXPXSCXXRGXPXNY 34
PPPPPP P P RG P Y
Sbjct: 86 PPPPPPPPEEPMVKRKRGRPRKY 108
>At1g20860.1 68414.m02613 phosphate transporter family protein
similar to phosphate transporter [Catharanthus roseus]
GI:2208908, inorganic phosphate transporter 1 [Solanum
tuberosum] GI:1420871; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 534
Score = 26.6 bits (56), Expect(2) = 3.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 129 HMS*XXSXXPPPPPPAP 79
H+S + PPPPPP P
Sbjct: 253 HISDEATTDPPPPPPPP 269
Score = 22.2 bits (45), Expect(2) = 3.2
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 102 PPPPPPAPXXPXSCXXR 52
PPPPPP+ C R
Sbjct: 264 PPPPPPSYKLFSRCFFR 280
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 24.6 bits (51), Expect(2) = 3.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP P P
Sbjct: 454 PPPPPPPPPPP 464
Score = 23.8 bits (49), Expect(2) = 3.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 452 SMPPPPPPPPP 462
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 29.5 bits (63), Expect = 6.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 102 PPPPPPAPXXPXSCXXRGXPXN 37
PPPPP P P SC P N
Sbjct: 106 PPPPPEEPPPPASCLRTKSPEN 127
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 24.6 bits (51), Expect(2) = 6.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
S PPPPPP P
Sbjct: 331 SKAPPPPPPPP 341
Score = 23.0 bits (47), Expect(2) = 6.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 99 PPPPPAPXXPXS 64
PPPPP P P S
Sbjct: 334 PPPPPPPPPPKS 345
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 23.8 bits (49), Expect(2) = 9.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
+ PPPPPP P
Sbjct: 20 TAAPPPPPPPP 30
Score = 23.4 bits (48), Expect(2) = 9.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP+ P
Sbjct: 25 PPPPPPSSSLP 35
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 23.8 bits (49), Expect(2) = 9.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 111 SXXPPPPPPAP 79
+ PPPPPP P
Sbjct: 20 TAAPPPPPPPP 30
Score = 23.4 bits (48), Expect(2) = 9.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 102 PPPPPPAPXXP 70
PPPPPP+ P
Sbjct: 25 PPPPPPSSSLP 35
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,916
Number of Sequences: 28952
Number of extensions: 295400
Number of successful extensions: 2130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4106040192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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