Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H08_e64_16.seq
         (1356 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.                  36   0.34 
BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16 p...    36   0.34 
BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16 p...    36   0.34 
AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16 p...    36   0.34 

>M60854-1|AAA60583.1|  146|Homo sapiens RPS16 protein.
          Length = 146

 Score = 35.9 bits (79), Expect = 0.34
 Identities = 32/109 (29%), Positives = 41/109 (37%)
 Frame = +2

Query: 98  ATXVXXCKRGXGVSXXXNGRPLXLGXPXLVQXXXXXTYXXCXXRXRSGGVYXRGXVXXGX 277
           AT V  CKRG G+    NGRPL +  P  +Q            + R  GV  R  V  G 
Sbjct: 19  ATAVAHCKRGNGL-IKVNGRPLEMIEPRTLQYKLLEPVLLLG-KERFAGVDIRVRVKGGG 76

Query: 278 AXXHRXMXXNXXXLXXLSLXTLYMCPKHLXKXIXDILXXXDXSLLXXDP 424
                           ++    Y+  +   K I DIL   D +LL  DP
Sbjct: 77  HVAQIYAIRQSISKALVAYYQKYV-DEASKKEIKDILIQYDRTLLVADP 124



 Score = 31.1 bits (67), Expect = 9.6
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 GXXXVAQXYAXKXXXSXALIAXYLIYVPEAS 363
           G   VAQ YA +   S AL+A Y  YV EAS
Sbjct: 74  GGGHVAQIYAIRQSISKALVAYYQKYVDEAS 104


>BC007977-1|AAH07977.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score = 35.9 bits (79), Expect = 0.34
 Identities = 32/109 (29%), Positives = 41/109 (37%)
 Frame = +2

Query: 98  ATXVXXCKRGXGVSXXXNGRPLXLGXPXLVQXXXXXTYXXCXXRXRSGGVYXRGXVXXGX 277
           AT V  CKRG G+    NGRPL +  P  +Q            + R  GV  R  V  G 
Sbjct: 19  ATAVAHCKRGNGL-IKVNGRPLEMIEPRTLQYKLLEPVLLLG-KERFAGVDIRVRVKGGG 76

Query: 278 AXXHRXMXXNXXXLXXLSLXTLYMCPKHLXKXIXDILXXXDXSLLXXDP 424
                           ++    Y+  +   K I DIL   D +LL  DP
Sbjct: 77  HVAQIYAIRQSISKALVAYYQKYV-DEASKKEIKDILIQYDRTLLVADP 124



 Score = 31.1 bits (67), Expect = 9.6
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 GXXXVAQXYAXKXXXSXALIAXYLIYVPEAS 363
           G   VAQ YA +   S AL+A Y  YV EAS
Sbjct: 74  GGGHVAQIYAIRQSISKALVAYYQKYVDEAS 104


>BC004324-1|AAH04324.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score = 35.9 bits (79), Expect = 0.34
 Identities = 32/109 (29%), Positives = 41/109 (37%)
 Frame = +2

Query: 98  ATXVXXCKRGXGVSXXXNGRPLXLGXPXLVQXXXXXTYXXCXXRXRSGGVYXRGXVXXGX 277
           AT V  CKRG G+    NGRPL +  P  +Q            + R  GV  R  V  G 
Sbjct: 19  ATAVAHCKRGNGL-IKVNGRPLEMIEPRTLQYKLLEPVLLLG-KERFAGVDIRVRVKGGG 76

Query: 278 AXXHRXMXXNXXXLXXLSLXTLYMCPKHLXKXIXDILXXXDXSLLXXDP 424
                           ++    Y+  +   K I DIL   D +LL  DP
Sbjct: 77  HVAQIYAIRQSISKALVAYYQKYV-DEASKKEIKDILIQYDRTLLVADP 124



 Score = 31.1 bits (67), Expect = 9.6
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 GXXXVAQXYAXKXXXSXALIAXYLIYVPEAS 363
           G   VAQ YA +   S AL+A Y  YV EAS
Sbjct: 74  GGGHVAQIYAIRQSISKALVAYYQKYVDEAS 104


>AB061841-1|BAB79479.1|  146|Homo sapiens ribosomal protein S16
           protein.
          Length = 146

 Score = 35.9 bits (79), Expect = 0.34
 Identities = 32/109 (29%), Positives = 41/109 (37%)
 Frame = +2

Query: 98  ATXVXXCKRGXGVSXXXNGRPLXLGXPXLVQXXXXXTYXXCXXRXRSGGVYXRGXVXXGX 277
           AT V  CKRG G+    NGRPL +  P  +Q            + R  GV  R  V  G 
Sbjct: 19  ATAVAHCKRGNGL-IKVNGRPLEMIEPRTLQYKLLEPVLLLG-KERFAGVDIRVRVKGGG 76

Query: 278 AXXHRXMXXNXXXLXXLSLXTLYMCPKHLXKXIXDILXXXDXSLLXXDP 424
                           ++    Y+  +   K I DIL   D +LL  DP
Sbjct: 77  HVAQIYAIRQSISKALVAYYQKYV-DEASKKEIKDILIQYDRTLLVADP 124



 Score = 31.1 bits (67), Expect = 9.6
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 GXXXVAQXYAXKXXXSXALIAXYLIYVPEAS 363
           G   VAQ YA +   S AL+A Y  YV EAS
Sbjct: 74  GGGHVAQIYAIRQSISKALVAYYQKYVDEAS 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,010,401
Number of Sequences: 237096
Number of extensions: 822409
Number of successful extensions: 265
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 19621669972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)