Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H08_e64_16.seq
         (1356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)            35   0.11 
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...    35   0.11 
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    33   0.33 

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score = 35.1 bits (77), Expect = 0.11
 Identities = 31/115 (26%), Positives = 42/115 (36%)
 Frame = +2

Query: 98  ATXVXXCKRGXGVSXXXNGRPLXLGXPXLVQXXXXXTYXXCXXRXRSGGVYXRGXVXXGX 277
           A  V  CKRG G+    NG P+ L  P +++            + R  GV  R  V  G 
Sbjct: 19  AVAVTHCKRGSGL-IKLNGCPIELFQPEILRFKIFEPVLLLG-KHRFAGVNMRIRVNGGG 76

Query: 278 AXXHRXMXXNXXXLXXLSLXTLYMCPKHLXKXIXDILXXXDXSLLXXDPXXXXPK 442
                           ++    Y+  +   K I DIL   D +LL  DP    PK
Sbjct: 77  HTSQVYAIRQSIAKALVAYYQKYV-DEQSKKEIKDILVRYDRTLLVADPRRCEPK 130


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score = 35.1 bits (77), Expect = 0.11
 Identities = 31/115 (26%), Positives = 42/115 (36%)
 Frame = +2

Query: 98  ATXVXXCKRGXGVSXXXNGRPLXLGXPXLVQXXXXXTYXXCXXRXRSGGVYXRGXVXXGX 277
           A  V  CKRG G+    NG P+ L  P +++            + R  GV  R  V  G 
Sbjct: 19  AVAVTHCKRGSGL-IKLNGCPIELFQPEILRFKIFEPILLLG-KHRFAGVNMRIRVNGGG 76

Query: 278 AXXHRXMXXNXXXLXXLSLXTLYMCPKHLXKXIXDILXXXDXSLLXXDPXXXXPK 442
                           ++    Y+  +   K I DIL   D +LL  DP    PK
Sbjct: 77  HTSQVYAIRQSIAKALVAYYQKYV-DEQSKKEIKDILVRYDRTLLVADPRRCEPK 130


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 29/109 (26%), Positives = 40/109 (36%)
 Frame = +2

Query: 98  ATXVXXCKRGXGVSXXXNGRPLXLGXPXLVQXXXXXTYXXCXXRXRSGGVYXRGXVXXGX 277
           AT V  CKRG G+    NG P+ L  P +++            + R  GV  R     G 
Sbjct: 19  ATAVTYCKRGSGM-IKLNGSPIELYQPEILRFKIFEP-VLLLGKHRFAGVDMRIRATGGG 76

Query: 278 AXXHRXMXXNXXXLXXLSLXTLYMCPKHLXKXIXDILXXXDXSLLXXDP 424
                           ++    Y+  +   K I DIL   D +LL  DP
Sbjct: 77  NTSRVYAIRQSIAKALVAYYQKYV-DEQSKKEIKDILMRYDRTLLVADP 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,933
Number of Sequences: 28952
Number of extensions: 110224
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3557656192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)