Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H07_e56_15.seq
         (1507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   142   1e-34
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   116   8e-27

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  142 bits (343), Expect = 1e-34
 Identities = 67/150 (44%), Positives = 95/150 (63%)
 Frame = +2

Query: 251 GXPFVLPSVRQAEEILXKKGLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQNKSNCTVQT 430
           G P+VLPSVRQAE  L  + L+  Y PI+G            +G+  + I+++   + Q+
Sbjct: 79  GKPYVLPSVRQAETELLSQKLDKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQS 137

Query: 431 LSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFDPKTNGFDL 610
           +SGTGAL +   F+ + Y  +K I++  PTWGNH  + +   L  K Y+Y+DP T G D+
Sbjct: 138 ISGTGALCIAANFLASFYP-SKTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDI 196

Query: 611 QGALEDISKIPEGSIILLHACAHNPTGVDP 700
           +G L D++  P+GSIILLHACAHNPTGVDP
Sbjct: 197 KGMLSDLTSAPDGSIILLHACAHNPTGVDP 226



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +1

Query: 133 AXVPMGPPDVILGITEAYKKDTHXNKVNLGVGS 231
           A VPMGPPD I GITEAYKKD    K+NLG G+
Sbjct: 41  ADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGT 73



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 879 FAKNMGLYGXPAXALTFXSXTLNSXAKVLS 968
           FAKNMGLYG  A   +  +      A++ S
Sbjct: 282 FAKNMGLYGERAGCFSILANDAEEAARIES 311


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  116 bits (279), Expect = 8e-27
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
 Frame = +2

Query: 227 GAYXR**XGXPFVLPSVRQAEEILXKKG-LNHGYPPISGXXXXXXXXXXXXFGEDSQVIQ 403
           GAY R   G P++LP+V++A +I+ ++   NH Y PI+G            F  +  ++ 
Sbjct: 38  GAY-RDDTGKPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNPHLLS 96

Query: 404 NKSNCTVQTLSGTGALRLGLEFITNHYAK--AKEIWMPTPTWGNHPQICNMLKLPHKKYR 577
                ++Q++SGTGA  L   FI   Y K     +++  PTW  H  +   L +    Y 
Sbjct: 97  EDRVASMQSVSGTGANFLAASFIETFYVKHTGAHVYISNPTWPVHRTLWEKLGVTVDTYP 156

Query: 578 YFDPKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDP 700
           Y+D K   FD +G L  I   PEGSI LLHACAHNPTG+DP
Sbjct: 157 YWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAHNPTGIDP 197



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 879 FAKNMGLYGXPAXALTFXSXTLNSXAKVLS 968
           FAKNMGLYG     + + +   ++  KVLS
Sbjct: 253 FAKNMGLYGERTGCMHYVAKDASTKNKVLS 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,961,718
Number of Sequences: 5004
Number of extensions: 70895
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 842423950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)