Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H07_e56_15.seq
(1507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 155 6e-38
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 131 2e-30
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 101 2e-21
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53... 32 1.4
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931... 29 9.6
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 29 9.6
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 155 bits (377), Expect = 6e-38
Identities = 78/159 (49%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Frame = +2
Query: 227 GAYXR**XGXPFVLPSVRQAEEILXKKGLN-HGYPPISGXXXXXXXXXXXXFGEDSQVIQ 403
GAY R G P VL VR+AE++L Y PI+G FG DS IQ
Sbjct: 39 GAY-RTEEGKPLVLNVVRRAEQMLINNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQ 97
Query: 404 NKSNCTVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYF 583
TVQ LSGTG+LR+G EF+ HY + + I++P PTWGNHP++ + L + YRY+
Sbjct: 98 ENRVATVQCLSGTGSLRVGGEFLARHYHE-RTIYIPQPTWGNHPKVFTLAGLTVRSYRYY 156
Query: 584 DPKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDP 700
DP T G D QG LED+ P G+I+LLHACAHNPTGVDP
Sbjct: 157 DPATRGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDP 195
Score = 37.9 bits (84), Expect = 0.021
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +1
Query: 133 AXVPMGPPDVILGITEAYKKDTHXNKVNLGVGS 231
A + P D ILG+T AY KD KVNLGVG+
Sbjct: 8 AGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGA 40
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 131 bits (316), Expect = 2e-30
Identities = 66/162 (40%), Positives = 91/162 (56%)
Frame = +2
Query: 227 GAYXR**XGXPFVLPSVRQAEEILXKKGLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQN 406
GAY R G P VL VR+AE + +N Y P+ G +GE+ + I++
Sbjct: 65 GAY-RDDSGKPVVLECVREAERRIAGS-MNMEYLPMGGSIKMIEESLKLAYGENCEFIKD 122
Query: 407 KSNCTVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFD 586
K VQ LSGTGA RL +F + +I++PTPTW NH I ++P K + Y+
Sbjct: 123 KRIAAVQALSGTGACRLFADF-QKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYH 181
Query: 587 PKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPRPQR 712
P++ G D G ++DI P+GS LLHACAHNPTGVDP ++
Sbjct: 182 PESRGLDFAGLMDDIKNAPDGSFFLLHACAHNPTGVDPSEEQ 223
Score = 36.3 bits (80), Expect = 0.063
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 157 DVILGITEAYKKDTHXNKVNLGVGSIXEMMXXXAICLTISEAGRR 291
D ILG+TEA+ D +KVN+GVG+ + + + EA RR
Sbjct: 42 DPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERR 86
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 101 bits (241), Expect = 2e-21
Identities = 43/94 (45%), Positives = 59/94 (62%)
Frame = +2
Query: 431 LSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFDPKTNGFDL 610
LSGTGA RL +F + +I++PTPTW NH I ++P + + Y+ P++ G D
Sbjct: 68 LSGTGACRLFADF-QRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDF 126
Query: 611 QGALEDISKIPEGSIILLHACAHNPTGVDPRPQR 712
G ++DI P GS LLHACAHNPTGVDP ++
Sbjct: 127 AGLMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQ 160
Score = 29.9 bits (64), Expect = 5.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 157 DVILGITEAYKKDTHXNKVNLGV 225
D ILG+TEA+ D +KVN+GV
Sbjct: 44 DPILGVTEAFLADPSPDKVNVGV 66
>01_01_0069 +
536787-537068,537193-537493,537528-537581,538848-539241,
539345-539595,539678-539798,539893-540133,540341-540445,
540571-540615,540738-540890,541132-541410,541705-541841,
541975-542017,542228-542329
Length = 835
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 642 GILEISSRAPWRSKPLVLGSK*RYFLCGNLSMLQICGWLPHV 517
G+L+ +S+ PW L+L SK Y+L L+++ WL V
Sbjct: 715 GLLQPNSKNPWLRNDLILKSKSIYYLSMGLNLVLRLAWLQTV 756
>10_06_0154 -
11291630-11292106,11292192-11292457,11293027-11293131,
11293210-11293234,11293349-11293465,11293528-11294041,
11295524-11295578,11295980-11296060,11296129-11296219,
11296321-11296417,11297465-11297529,11297950-11298108,
11298208-11298455,11300667-11300835
Length = 822
Score = 29.1 bits (62), Expect = 9.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 891 CF-WQSX*XSNHXVVPPXRNKTDGEKRHCXTLXGSEXLGK 775
CF W++ N ++PP R +T G + TL E L K
Sbjct: 553 CFSWRTRKFHNRLILPPVRQQTSGTCSYYATLSSVESLYK 592
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 29.1 bits (62), Expect = 9.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 461 LEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPH 565
L + H+ + + + P+ GNHP I MLK H
Sbjct: 579 LNHVWGHWTRGNVVELIDPSLGNHPPIEQMLKCIH 613
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,489,713
Number of Sequences: 37544
Number of extensions: 585925
Number of successful extensions: 1245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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