BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_H07_e56_15.seq (1507 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0) 110 3e-24 SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7) 49 8e-06 SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07) 29 7.3 SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 29 9.7 >SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0) Length = 512 Score = 110 bits (264), Expect = 3e-24 Identities = 60/154 (38%), Positives = 80/154 (51%), Gaps = 5/154 (3%) Frame = +2 Query: 251 GXPFVLPSVRQAEEILXKK----GLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQNKSNC 418 G P+VLP V + E L + LNH Y I G G D I C Sbjct: 111 GKPWVLPVVSKVETQLAQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNRVC 170 Query: 419 TVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPH-KKYRYFDPKT 595 +Q++SGTG++ LGL+F+ Y K ++ PTWGNH + + ++YRY+ +T Sbjct: 171 GIQSISGTGSVFLGLKFLYQFY-NCKTAYISKPTWGNHLKTLKAVGFTDIREYRYYKAET 229 Query: 596 NGFDLQGALEDISKIPEGSIILLHACAHNPTGVD 697 D ED+ K PEGSII+LH CAHNPTGVD Sbjct: 230 CSVDFDAMWEDLEKAPEGSIIVLHECAHNPTGVD 263 Score = 32.7 bits (71), Expect = 0.79 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 139 VPMGPPDVILGITEAYKKDTHXNKVNLGVGS 231 VP+ P D + + Y KD +K+NLGVG+ Sbjct: 10 VPLVPTDHVFHVMACYNKDKDPSKINLGVGA 40 >SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7) Length = 130 Score = 49.2 bits (112), Expect = 8e-06 Identities = 20/31 (64%), Positives = 26/31 (83%) Frame = +1 Query: 139 VPMGPPDVILGITEAYKKDTHXNKVNLGVGS 231 V GPPD ILG+TEA+K+DT+ K+NLGVG+ Sbjct: 55 VEAGPPDAILGVTEAFKRDTNPKKMNLGVGA 85 >SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07) Length = 276 Score = 29.5 bits (63), Expect = 7.3 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 637 NSGRFHHFTSRVCAQSHRCRPETPATGNSCLRV 735 N+GR + F + AQ R P+ GN+C+R+ Sbjct: 9 NTGRVNWFKVPIAAQFIRVHPQAVNGGNACMRI 41 >SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) Length = 1227 Score = 29.1 bits (62), Expect = 9.7 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +2 Query: 470 ITNHYAKAKEIWMPTPTWGNHPQICN 547 +T+ AK +W+ P++GN PQ N Sbjct: 92 VTHRSAKESRLWLSEPSYGNWPQQLN 117 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 32,026,276 Number of Sequences: 59808 Number of extensions: 615384 Number of successful extensions: 1146 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1048 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1144 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4882915232 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -