Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H07_e56_15.seq
         (1507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)               110   3e-24
SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)           49   8e-06
SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)                   29   7.3  
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                29   9.7  

>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score =  110 bits (264), Expect = 3e-24
 Identities = 60/154 (38%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
 Frame = +2

Query: 251 GXPFVLPSVRQAEEILXKK----GLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQNKSNC 418
           G P+VLP V + E  L +      LNH Y  I G             G D   I     C
Sbjct: 111 GKPWVLPVVSKVETQLAQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNRVC 170

Query: 419 TVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPH-KKYRYFDPKT 595
            +Q++SGTG++ LGL+F+   Y   K  ++  PTWGNH +    +     ++YRY+  +T
Sbjct: 171 GIQSISGTGSVFLGLKFLYQFY-NCKTAYISKPTWGNHLKTLKAVGFTDIREYRYYKAET 229

Query: 596 NGFDLQGALEDISKIPEGSIILLHACAHNPTGVD 697
              D     ED+ K PEGSII+LH CAHNPTGVD
Sbjct: 230 CSVDFDAMWEDLEKAPEGSIIVLHECAHNPTGVD 263



 Score = 32.7 bits (71), Expect = 0.79
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 139 VPMGPPDVILGITEAYKKDTHXNKVNLGVGS 231
           VP+ P D +  +   Y KD   +K+NLGVG+
Sbjct: 10  VPLVPTDHVFHVMACYNKDKDPSKINLGVGA 40


>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
          Length = 130

 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 20/31 (64%), Positives = 26/31 (83%)
 Frame = +1

Query: 139 VPMGPPDVILGITEAYKKDTHXNKVNLGVGS 231
           V  GPPD ILG+TEA+K+DT+  K+NLGVG+
Sbjct: 55  VEAGPPDAILGVTEAFKRDTNPKKMNLGVGA 85


>SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)
          Length = 276

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 637 NSGRFHHFTSRVCAQSHRCRPETPATGNSCLRV 735
           N+GR + F   + AQ  R  P+    GN+C+R+
Sbjct: 9   NTGRVNWFKVPIAAQFIRVHPQAVNGGNACMRI 41


>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1227

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 470 ITNHYAKAKEIWMPTPTWGNHPQICN 547
           +T+  AK   +W+  P++GN PQ  N
Sbjct: 92  VTHRSAKESRLWLSEPSYGNWPQQLN 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,026,276
Number of Sequences: 59808
Number of extensions: 615384
Number of successful extensions: 1146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4882915232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)