Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H07_e56_15.seq
(1507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical pr... 167 2e-41
U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical pr... 165 7e-41
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 154 1e-37
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 113 2e-25
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 51 2e-06
U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical pr... 40 0.005
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 32 0.92
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 32 0.92
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 8.6
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 29 8.6
>U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical
protein C14F11.1a protein.
Length = 414
Score = 167 bits (405), Expect = 2e-41
Identities = 91/183 (49%), Positives = 111/183 (60%)
Frame = +2
Query: 227 GAYXR**XGXPFVLPSVRQAEEILXKKGLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQN 406
GAY R G PFVLPSV++AE + L+ Y I G GE+S VI+N
Sbjct: 50 GAY-RDDQGKPFVLPSVKEAERQVIAANLDKEYAGIVGLPEFTKLSAQLALGENSDVIKN 108
Query: 407 KSNCTVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFD 586
K T Q++SGTGALR+G EF++ YAK K I+ PTPTWGNH I + K+YRY+D
Sbjct: 109 KRIFTTQSISGTGALRIGSEFLSK-YAKTKVIYQPTPTWGNHVPIFKFAGVDVKQYRYYD 167
Query: 587 PKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPRPQRLGTAV*GSSXRGKLXXFF 766
T GFD GAL DI++IPEGS ILLHACAHNPTGVDP + + + L FF
Sbjct: 168 KSTCGFDETGALADIAQIPEGSTILLHACAHNPTGVDPSRDQ-WKKISDIVKKRNLFVFF 226
Query: 767 DMA 775
DMA
Sbjct: 227 DMA 229
Score = 52.4 bits (120), Expect = 8e-07
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +1
Query: 139 VPMGPPDVILGITEAYKKDTHXNKVNLGVGSIXEMMXXXAICLTISEAGRR 291
V MGPPD ILG+TEA+K D++ K+NLGVG+ + + ++ EA R+
Sbjct: 21 VEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEAERQ 71
Score = 31.5 bits (68), Expect = 1.6
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 810 NDAFRRPSCFVKXGPPXDCSLXXFAKNMGLYGXPAXALTFXSXTLNSXAKVLSXV 974
NDAF FV+ G S FAKNMGLYG A + + + A+V S V
Sbjct: 240 NDAFA-VRYFVEQGHNIVLS-QSFAKNMGLYGERVGAFSVVTSDADEAARVASQV 292
>U39645-9|AAM51511.1| 297|Caenorhabditis elegans Hypothetical
protein C14F11.1b protein.
Length = 297
Score = 165 bits (401), Expect = 7e-41
Identities = 90/182 (49%), Positives = 110/182 (60%)
Frame = +2
Query: 227 GAYXR**XGXPFVLPSVRQAEEILXKKGLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQN 406
GAY R G PFVLPSV++AE + L+ Y I G GE+S VI+N
Sbjct: 50 GAY-RDDQGKPFVLPSVKEAERQVIAANLDKEYAGIVGLPEFTKLSAQLALGENSDVIKN 108
Query: 407 KSNCTVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFD 586
K T Q++SGTGALR+G EF++ YAK K I+ PTPTWGNH I + K+YRY+D
Sbjct: 109 KRIFTTQSISGTGALRIGSEFLSK-YAKTKVIYQPTPTWGNHVPIFKFAGVDVKQYRYYD 167
Query: 587 PKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPRPQRLGTAV*GSSXRGKLXXFF 766
T GFD GAL DI++IPEGS ILLHACAHNPTGVDP + + + L FF
Sbjct: 168 KSTCGFDETGALADIAQIPEGSTILLHACAHNPTGVDPSRDQ-WKKISDIVKKRNLFVFF 226
Query: 767 DM 772
DM
Sbjct: 227 DM 228
Score = 52.4 bits (120), Expect = 8e-07
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +1
Query: 139 VPMGPPDVILGITEAYKKDTHXNKVNLGVGSIXEMMXXXAICLTISEAGRR 291
V MGPPD ILG+TEA+K D++ K+NLGVG+ + + ++ EA R+
Sbjct: 21 VEMGPPDAILGVTEAFKADSNPKKINLGVGAYRDDQGKPFVLPSVKEAERQ 71
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 154 bits (374), Expect = 1e-37
Identities = 82/183 (44%), Positives = 115/183 (62%)
Frame = +2
Query: 227 GAYXR**XGXPFVLPSVRQAEEILXKKGLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQN 406
GAY R G PFVL +VR+AE+ + ++ Y I+G FG++S+VI++
Sbjct: 55 GAY-RDDQGKPFVLRAVREAEQQIIDAKMDKEYSTITGVPEFAPLAAKLAFGDNSEVIRD 113
Query: 407 KSNCTVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFD 586
T Q++SGTGALR+G +F+ + +K ++ PTPTW NH + L + YRY++
Sbjct: 114 GRVFTTQSISGTGALRIGGQFVEK-FIPSKTLFYPTPTWANHLPVFRNSGLSIQPYRYYN 172
Query: 587 PKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPRPQRLGTAV*GSSXRGKLXXFF 766
+T GFD++GALEDISK+PEGS+ILLHACAHNPTGVDP ++ R K+ FF
Sbjct: 173 QETLGFDVEGALEDISKMPEGSVILLHACAHNPTGVDPTKEQWKKLSQVLKER-KILPFF 231
Query: 767 DMA 775
DMA
Sbjct: 232 DMA 234
Score = 52.4 bits (120), Expect = 8e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +1
Query: 139 VPMGPPDVILGITEAYKKDTHXNKVNLGVGSIXEMMXXXAICLTISEA 282
VP+ P D ILG+TEA+KKDT+ NK+NLGVG+ + + + EA
Sbjct: 26 VPLAPADPILGVTEAFKKDTNPNKINLGVGAYRDDQGKPFVLRAVREA 73
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 113 bits (273), Expect = 2e-25
Identities = 69/185 (37%), Positives = 91/185 (49%), Gaps = 2/185 (1%)
Frame = +2
Query: 227 GAYXR**XGXPFVLPSVRQAE-EILXKKGLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQ 403
GAY R G P+VLP V + E EI LNH Y P+ G G +S I+
Sbjct: 36 GAY-RTEEGQPWVLPVVHETEVEIANDTSLNHEYLPVLGHEGFRKAATELVLGAESPAIK 94
Query: 404 NKSNCTVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPH-KKYRY 580
+ + VQ LSGTGALR G EF+ + K +++ PTWGNH + Y +
Sbjct: 95 EERSFGVQCLSGTGALRAGAEFLAS-VCNMKTVYVSNPTWGNHKLVFKKAGFTTVADYTF 153
Query: 581 FDPKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVDPRPQRLGTAV*GSSXRGKLXX 760
+D ++ L D+ PE S+I+LH CAHNPTG+DP Q V R L
Sbjct: 154 WDYDNKRVHIEKFLSDLESAPEKSVIILHGCAHNPTGMDP-TQEQWKLVAEVIKRKNLFT 212
Query: 761 FFDMA 775
FFD+A
Sbjct: 213 FFDIA 217
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 50.8 bits (116), Expect = 2e-06
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +2
Query: 251 GXPFVLPSVRQAE-EILXKKGLNHGYPPISGXXXXXXXXXXXXFGEDSQVIQNKSNCTVQ 427
G P+VLP VR+ E + + NH Y PI G G DS I+ + +VQ
Sbjct: 45 GEPWVLPVVREIELKFPHEPHHNHEYLPILGHDGFCKSATALLLGNDSLAIKEGRSFSVQ 104
Query: 428 TLSGTGALRLGLEFITNHYAKAKEIWMPTP 517
+SGTGA+ +G EF+ K I++ P
Sbjct: 105 CISGTGAICVGAEFLA-QVLSMKTIYVSNP 133
>U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical
protein C14E2.2 protein.
Length = 364
Score = 39.9 bits (89), Expect = 0.005
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +2
Query: 569 KYRYFDPKTNGFDLQGALEDISKIPEGSIILLHACAHNPTGVD 697
+Y +++ + D++ L D+ P S+I+L ACA+NPTG+D
Sbjct: 106 EYTFWNYEEKCVDIEKLLSDLEFAPAKSVIILPACAYNPTGMD 148
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
glutamate receptor protein1 protein.
Length = 1025
Score = 32.3 bits (70), Expect = 0.92
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = -2
Query: 696 STPVGL---CAHA*SKMMEPSGILEISSRAPWRSKPLVLGSK*RYFLCGNLSMLQICGW- 529
+TP+G CA + ++E S +I PW S PL L + YF C L++ +
Sbjct: 410 TTPIGSPSQCAELGNTVVEWSIFDKIVVSGPWYSCPLTLENSTEYFCCAGLAIDLLSNLS 469
Query: 528 LPHVGVGIQISLAFA 484
LP I S F+
Sbjct: 470 LPEANNSIDTSFTFS 484
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 32.3 bits (70), Expect = 0.92
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = -2
Query: 696 STPVGL---CAHA*SKMMEPSGILEISSRAPWRSKPLVLGSK*RYFLCGNLSMLQICGW- 529
+TP+G CA + ++E S +I PW S PL L + YF C L++ +
Sbjct: 410 TTPIGSPSQCAELGNTVVEWSIFDKIVVSGPWYSCPLTLENSTEYFCCAGLAIDLLSNLS 469
Query: 528 LPHVGVGIQISLAFA 484
LP I S F+
Sbjct: 470 LPEANNSIDTSFTFS 484
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
protein F29D10.4 protein.
Length = 1100
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 672 VRTIPPVSTRDPSDWEQLSKGHQXE 746
VR I P T+ P+DWE+ HQ E
Sbjct: 582 VRCIKPNETKRPNDWEESRVKHQVE 606
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 672 VRTIPPVSTRDPSDWEQLSKGHQXE 746
VR I P T+ P+DWE+ HQ E
Sbjct: 519 VRCIKPNETKRPNDWEESRVKHQVE 543
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,036,040
Number of Sequences: 27780
Number of extensions: 446610
Number of successful extensions: 774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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