Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H07_e56_15.seq
         (1507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   2.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   2.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    24   3.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    24   3.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 396 TWLSSPKANLATASVXAASPL 334
           TWLS   +N++ +SV   SPL
Sbjct: 28  TWLSLDNSNMSMSSVGPQSPL 48


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 396 TWLSSPKANLATASVXAASPL 334
           TWLS   +N++ +SV   SPL
Sbjct: 28  TWLSLDNSNMSMSSVGPQSPL 48


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 666 TRVRTIPPVSTRDPSDWEQLSKGHQXEG 749
           T  + +  + T+ P DWE+LS  +   G
Sbjct: 82  TANKVVNYLKTKRPKDWERLSAKYDSTG 109


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 666 TRVRTIPPVSTRDPSDWEQLSKGHQXEG 749
           T  + +  + T+ P DWE+LS  +   G
Sbjct: 82  TANKVVNYLKTKRPKDWERLSAKYDSTG 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,385
Number of Sequences: 438
Number of extensions: 5675
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52635000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)