Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H06_e48_16.seq
         (1471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   3.7  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    27   6.5  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 477 FPFACNDIHFENYFYLFGNKLVNEINVQSVRNFASIVCL 361
           FP   +D +F     +FG  L+N+IN Q + N  ++V L
Sbjct: 497 FPIHGDDSYFPREIQMFG--LINDINYQILSNMNNLVLL 533


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 536 NSENIETEVQMYKGLLDTFNF 474
           N E+IE  V++ + LLDTF+F
Sbjct: 172 NKESIERSVELAQWLLDTFSF 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,177,651
Number of Sequences: 5004
Number of extensions: 69548
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 818637862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)