Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H04_e32_16.seq
         (1480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    30   0.71 
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   3.8  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    28   3.8  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   5.0  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    27   5.0  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   6.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   6.6  

>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
 Frame = +1

Query: 295 SNEVQILTNELNAASGKLSSINELADQALKRAKVVYEEALGLYAEV--NTTLLPDIKLRK 468
           S E   L  +L + + +    ++ A+   +++++ +   L    +   N  ++ +IK   
Sbjct: 320 SEEFSTLNLQLESITSQYLFSSKEAEIVFRKSRIEFMNKLKALQQKLENERIVEEIKKNG 379

Query: 469 LHEDSLGMNRTI--DDKAADLDRLIAENEDTLKGLDEAIKRGRDLLEQGHDRQDELNDLL 642
           + EDS   + +   DD  ++ + +   N+   +  D+A   G    ++  D QD  NDLL
Sbjct: 380 IQEDSQSTDDSSKDDDNNSESNDMSPHNDAETRADDDAYLMGDLFNQEEEDIQDTENDLL 439


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +1

Query: 169 DSXAEKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKL 348
           +S AEK E E   + +  DKA        K  +  +T ++  S E     +EL      L
Sbjct: 101 ESVAEKPEKEDLAVIESEDKAAKPDGEIKKNVETEVTSRSTSSQE----KDELEKQVKTL 156

Query: 349 SSINELADQALKRAK 393
             +NE  D+ +K  K
Sbjct: 157 HDLNEQKDKKIKELK 171


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 22/96 (22%), Positives = 45/96 (46%)
 Frame = +1

Query: 343 KLSSINELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAAD 522
           K+++     D+A+ RA+    +   +  +++        L +  E +      ++++   
Sbjct: 7   KINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQ 66

Query: 523 LDRLIAENEDTLKGLDEAIKRGRDLLEQGHDRQDEL 630
           L RL A+NED  K   E + R  +LLE+  +  D+L
Sbjct: 67  L-RLKADNEDIQKTEAEQLSRKVELLEEELETNDKL 101


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +1

Query: 448 PDIKLRKLHEDSLGMNRTIDDKAADLDRLIAENEDTLKGLDEAIKRGRDLLEQGHDRQDE 627
           PD + R  H+     ++ I  +  D++  + + +D  K LDE+ ++  +LLE+  +R +E
Sbjct: 269 PDFRTRN-HQFHSRDSQPITQRHTDIESRLQKMQDNAKELDESRRKKIELLEK-KERDEE 326


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 319 NELNAASGKL-SSINELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLR 465
           N+LN    +L SS+  L D  L  A  +  E   LYA V+ T L D+K R
Sbjct: 151 NQLNVLHDRLESSLKRLRDCTLDPA--LGSEYTNLYAFVDDTALEDLKTR 198


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 205 FSPHSLISPRWSLDSLASADISTDCFPN*SDLLRAFANAAAPSPSK 68
           F+ + +   RW + SL++A     CFP  S  + AF     P+  K
Sbjct: 91  FARNRIAPARWLITSLSTAATFMFCFPKTSKNIGAFVEKRFPAIRK 136


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 178 AEKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISN 300
           AEKLEN+A++ + I  KA   +  +  + K+ +  +  + N
Sbjct: 348 AEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVNLEEEVDN 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,554,371
Number of Sequences: 5004
Number of extensions: 52185
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 824584384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)