Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H04_e32_16.seq
(1480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 46 9e-05
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 34 0.30
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 32 0.90
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 32 0.90
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 32 0.90
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 32 1.2
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 6.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 6.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 6.4
AF043693-3|AAB97537.1| 207|Caenorhabditis elegans Hypothetical ... 29 6.4
Z81094-2|CAB03156.1| 770|Caenorhabditis elegans Hypothetical pr... 29 8.4
Z81094-1|CAB03150.1| 784|Caenorhabditis elegans Hypothetical pr... 29 8.4
U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical pr... 29 8.4
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 29 8.4
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 29 8.4
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 45.6 bits (103), Expect = 9e-05
Identities = 32/155 (20%), Positives = 66/155 (42%)
Frame = +1
Query: 178 AEKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSI 357
AEK +A I ++++A + ANK A D I IS ++ L + N + +
Sbjct: 1191 AEKHLKQASEIEQLSEQAIANATQANKEASDAIYGGEQISKQIAELKEKQNQLNESIHRT 1250
Query: 358 NELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADLDRLI 537
+LA++ K A A V +P + ++L D G+ ++ +
Sbjct: 1251 LDLAEEQKKSADEANNLAAVSLTNVEAVKIPSVDPKELRNDVAGVLEESENLVDSSVKEN 1310
Query: 538 AENEDTLKGLDEAIKRGRDLLEQGHDRQDELNDLL 642
+ N++ ++ ++ R+ L+ D+Q + L+
Sbjct: 1311 SANDELFDEVNRSVADARNELQSSQDQQRVSDQLM 1345
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
of males (increasedx chromosome loss) protein 1, isoform
a protein.
Length = 1281
Score = 33.9 bits (74), Expect = 0.30
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Frame = +1
Query: 181 EKLENEARNIRDIADKAFNTSXVA---NKIAKDGITKQANISNEVQILTN--ELNAASGK 345
+KLE + + KA N S K K+ K+A E+Q + ELN + +
Sbjct: 322 KKLEIAKKMLAAAESKAENNSTQLADLKKSKKELEKKKAAYEAEIQDMMQRGELNLSDEQ 381
Query: 346 LSSINELADQALKRAKVVYEEAL---GLYAEVNTTLLPDIKLRKLHEDSL----GMNRTI 504
+ +L DQA + + +V E L ++ ++L +++ +K H++ + G R I
Sbjct: 382 VREYGQLKDQAQRESAMVQRELLMAEQVFEGDKSSLNHELRRQKEHQERVKAKEGDVRRI 441
Query: 505 DDKAADLDRLIAENEDTLKGLDEAIKR 585
+ + A L + I E E+ K L +K+
Sbjct: 442 ETQIATLAQRIKETEEETKILKADLKK 468
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 32.3 bits (70), Expect = 0.90
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Frame = +1
Query: 226 KAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSINELADQALKRAKVVYE 405
K+ NT + N A + ++ + NEVQI NEL+ +L + E A +A A + E
Sbjct: 1717 KSSNTELIGNNAALSAMKRK--VENEVQIARNELDEYLNELKASEERARKAAADADRLAE 1774
Query: 406 EALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADL----DRLIAENEDTLKGLD 570
E + E + D + + L ++ + IDD + + +A+ ED ++ L+
Sbjct: 1775 E---VRQEQEHAVHVDRQRKSLELNAKELQAKIDDAERAMIQFGAKALAKVEDRVRSLE 1830
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 32.3 bits (70), Expect = 0.90
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Frame = +1
Query: 226 KAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSINELADQALKRAKVVYE 405
K+ NT + N A + ++ + NEVQI NEL+ +L + E A +A A + E
Sbjct: 1717 KSSNTELIGNNAALSAMKRK--VENEVQIARNELDEYLNELKASEERARKAAADADRLAE 1774
Query: 406 EALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADL----DRLIAENEDTLKGLD 570
E + E + D + + L ++ + IDD + + +A+ ED ++ L+
Sbjct: 1775 E---VRQEQEHAVHVDRQRKSLELNAKELQAKIDDAERAMIQFGAKALAKVEDRVRSLE 1830
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 32.3 bits (70), Expect = 0.90
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Frame = +1
Query: 226 KAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSINELADQALKRAKVVYE 405
K+ NT + N A + ++ + NEVQI NEL+ +L + E A +A A + E
Sbjct: 1717 KSSNTELIGNNAALSAMKRK--VENEVQIARNELDEYLNELKASEERARKAAADADRLAE 1774
Query: 406 EALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADL----DRLIAENEDTLKGLD 570
E + E + D + + L ++ + IDD + + +A+ ED ++ L+
Sbjct: 1775 E---VRQEQEHAVHVDRQRKSLELNAKELQAKIDDAERAMIQFGAKALAKVEDRVRSLE 1830
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical protein
C23H4.6 protein.
Length = 1137
Score = 31.9 bits (69), Expect = 1.2
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 6/143 (4%)
Frame = +1
Query: 169 DSXAEKLENEARNI-RDIADKAFNTSXVANKIAKDGITKQ-ANISNEVQILTNELNAASG 342
D +L+ E I R+I D + + AN D I + ++ IL E
Sbjct: 722 DKKTRELQYERVKIDRNINDWKADMTQCANTEQVDNINDALGELQEKLSILEEEAYCIQD 781
Query: 343 KLSSINELADQALKRAKVVYEEALGLYAEVN----TTLLPDIKLRKLHEDSLGMNRTIDD 510
KL ++E A+K + + L EV TL +LRKL ED +D
Sbjct: 782 KLDELDEKFQPAIKTKNESEKNYVELQQEVKGYAAQTLSFQKQLRKLDEDGEAGKNRLDK 841
Query: 511 KAADLDRLIAENEDTLKGLDEAI 579
++ D L + DEA+
Sbjct: 842 LKSNEDELYHDEARLKSERDEAL 864
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.5 bits (63), Expect = 6.4
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Frame = +1
Query: 181 EKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSIN 360
EKLE E +RD + + + T+ NI + +Q E A +L S
Sbjct: 1674 EKLEMERNELRDTLARMKKKTTETHTTINQKETRYRNIEDNLQDAEEERRALESRLQSAK 1733
Query: 361 ELADQALKRAKVVYEEALGLYAEVNTTLL----PDIKLRKLHEDSLGMNRTIDDKAADLD 528
L + K EE + +++ L + +LR L+E + +D+ D+
Sbjct: 1734 TLLRSQEEALKQRDEERRQMKSKMVAAELQARGKEAQLRHLNEQLKNLRTDLDNAHTDIR 1793
Query: 529 RLIAENE 549
L + E
Sbjct: 1794 SLRDKEE 1800
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.5 bits (63), Expect = 6.4
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Frame = +1
Query: 181 EKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSIN 360
EKLE E +RD + + + T+ NI + +Q E A +L S
Sbjct: 1747 EKLEMERNELRDTLARMKKKTTETHTTINQKETRYRNIEDNLQDAEEERRALESRLQSAK 1806
Query: 361 ELADQALKRAKVVYEEALGLYAEVNTTLL----PDIKLRKLHEDSLGMNRTIDDKAADLD 528
L + K EE + +++ L + +LR L+E + +D+ D+
Sbjct: 1807 TLLRSQEEALKQRDEERRQMKSKMVAAELQARGKEAQLRHLNEQLKNLRTDLDNAHTDIR 1866
Query: 529 RLIAENE 549
L + E
Sbjct: 1867 SLRDKEE 1873
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.5 bits (63), Expect = 6.4
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Frame = +1
Query: 181 EKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSIN 360
EKLE E +RD + + + T+ NI + +Q E A +L S
Sbjct: 1747 EKLEMERNELRDTLARMKKKTTETHTTINQKETRYRNIEDNLQDAEEERRALESRLQSAK 1806
Query: 361 ELADQALKRAKVVYEEALGLYAEVNTTLL----PDIKLRKLHEDSLGMNRTIDDKAADLD 528
L + K EE + +++ L + +LR L+E + +D+ D+
Sbjct: 1807 TLLRSQEEALKQRDEERRQMKSKMVAAELQARGKEAQLRHLNEQLKNLRTDLDNAHTDIR 1866
Query: 529 RLIAENE 549
L + E
Sbjct: 1867 SLRDKEE 1873
>AF043693-3|AAB97537.1| 207|Caenorhabditis elegans Hypothetical
protein C34B2.5 protein.
Length = 207
Score = 29.5 bits (63), Expect = 6.4
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Frame = +1
Query: 250 ANKIAKDGITKQANISNEVQ-ILTNELNAASGKLSSINELADQALKRAKV--VYEEALGL 420
AN+ ++ I S EVQ IL + AA KL + A K ++ E+AL
Sbjct: 37 ANEKYQEAIASCPPTSTEVQSILLSNSAAALIKLRKWESAVEAASKSIEIGATNEKALER 96
Query: 421 YAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADLDRLIAENEDTLKGLDEAIKRGRDLL 600
A + + K ED + ++ + +LDR IAE + + +EA+K D++
Sbjct: 97 RAFAYSNMSE--KYENSIEDYKQLQESLPKRRVELDRKIAEINEKINNRNEAMK--ADVM 152
Query: 601 EQ 606
E+
Sbjct: 153 EK 154
>Z81094-2|CAB03156.1| 770|Caenorhabditis elegans Hypothetical
protein F58G11.1b protein.
Length = 770
Score = 29.1 bits (62), Expect = 8.4
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Frame = +1
Query: 169 DSXAEKLENEARNIRD-IADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGK 345
DS +KLE+E RNIR+ + D S K ++ I + + L +L + G+
Sbjct: 570 DSMVDKLEDEKRNIREMLIDPTVENSVDLKK------EREVRIQDVIDSLA-KLKESKGE 622
Query: 346 LSSINELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADL 525
+ E ++ K + E++ G+ + +L I+L + H D + AA +
Sbjct: 623 QADDGEQRERIEALLKTIDEDSDGIVDK--QLVLEVIELLEKHTD-------VHVSAAQM 673
Query: 526 DRLIA--ENEDTLKGLDEAIKR 585
+I + ED + GL E I++
Sbjct: 674 ASMIGTLKKEDEVAGLTEEIRK 695
>Z81094-1|CAB03150.1| 784|Caenorhabditis elegans Hypothetical
protein F58G11.1a protein.
Length = 784
Score = 29.1 bits (62), Expect = 8.4
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Frame = +1
Query: 169 DSXAEKLENEARNIRD-IADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGK 345
DS +KLE+E RNIR+ + D S K ++ I + + L +L + G+
Sbjct: 570 DSMVDKLEDEKRNIREMLIDPTVENSVDLKK------EREVRIQDVIDSLA-KLKESKGE 622
Query: 346 LSSINELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADL 525
+ E ++ K + E++ G+ + +L I+L + H D + AA +
Sbjct: 623 QADDGEQRERIEALLKTIDEDSDGIVDK--QLVLEVIELLEKHTD-------VHVSAAQM 673
Query: 526 DRLIA--ENEDTLKGLDEAIKR 585
+I + ED + GL E I++
Sbjct: 674 ASMIGTLKKEDEVAGLTEEIRK 695
>U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical
protein C43G2.2 protein.
Length = 869
Score = 29.1 bits (62), Expect = 8.4
Identities = 25/141 (17%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Frame = +1
Query: 181 EKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSIN 360
E L+ + ++ +++AFN + +A+ + + + + + ++++ L S
Sbjct: 521 ESLKKMIQVVKRTSEQAFNQAVMASGAENEIEMQNMKLRSLLSTKRDQISTLRTVLKSNK 580
Query: 361 ELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTI-DDKAADLDRLI 537
A+ AL + YE + E+N + ++K K + +R + + +L +
Sbjct: 581 LTAESALTSMREKYESEKKMMMEINDKMRRELKQLKEDAATFASHRAMFTARGEELKSKV 640
Query: 538 AENEDTLKGLDEAIKRGRDLL 600
E + L+ +E K LL
Sbjct: 641 EELSNELRANEEEKKTLNQLL 661
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 29.1 bits (62), Expect = 8.4
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = +1
Query: 190 ENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSINELA 369
E+ ++N+R +A+ +FN + KI G Q ++ I N A + +++ +
Sbjct: 2542 ESISQNVRALAEPSFNCDSILGKINAPG--PQTETTSHELIEKNTAAAVANVKAAVESVI 2599
Query: 370 DQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMN-RTIDDKAADLDRLIAEN 546
+ AK+ +E + L D+ ++ G + R ++ A++ +
Sbjct: 2600 SKESSLAKLPADEKAIITNLAGLVLSKDVSSLCTSSETFGFDQRIFRNQNANISLGAVRS 2659
Query: 547 EDTLKGLDEAIK 582
E L+ L E I+
Sbjct: 2660 ETLLQRLREPIE 2671
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.1 bits (62), Expect = 8.4
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = +1
Query: 190 ENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKLSSINELA 369
E+ ++N+R +A+ +FN + KI G Q ++ I N A + +++ +
Sbjct: 2542 ESISQNVRALAEPSFNCDSILGKINAPG--PQTETTSHELIEKNTAAAVANVKAAVESVI 2599
Query: 370 DQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMN-RTIDDKAADLDRLIAEN 546
+ AK+ +E + L D+ ++ G + R ++ A++ +
Sbjct: 2600 SKESSLAKLPADEKAIITNLAGLVLSKDVSSLCTSSETFGFDQRIFRNQNANISLGAVRS 2659
Query: 547 EDTLKGLDEAIK 582
E L+ L E I+
Sbjct: 2660 ETLLQRLREPIE 2671
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,046,012
Number of Sequences: 27780
Number of extensions: 315710
Number of successful extensions: 776
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4245924624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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