Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H04_e32_16.seq
         (1480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    33   0.48 
At3g05130.1 68416.m00557 expressed protein ; expression supporte...    33   0.63 
At3g20070.2 68416.m02539 expressed protein                             31   1.5  
At3g20070.1 68416.m02538 expressed protein                             31   1.5  
At3g02930.1 68416.m00288 expressed protein  ; expression support...    31   1.5  
At3g62490.1 68416.m07021 expressed protein hypothetical proteins...    30   3.4  
At4g02880.1 68417.m00388 expressed protein                             29   7.8  
At2g32240.1 68415.m03940 expressed protein contains Pfam profile...    29   7.8  

>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
 Frame = +1

Query: 187 LENEARNIRDIADKAFNTSX---VANKIAKDGITKQANISNEVQILTNELNAASGKLSSI 357
           LE + +++ ++++K         VA +  K    +      +V  L + LN +S + S +
Sbjct: 155 LEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSEL 214

Query: 358 NELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADLDRLI 537
            E  D  +   K    E +G     N +    ++L+ L + S       ++K  DL+ + 
Sbjct: 215 EE--DLRIALQKGAEHEDIG-----NVSTKRSVELQGLFQTSQLKLEKAEEKLKDLEAIQ 267

Query: 538 AENEDTLKGLDEAIKRGRDLLE 603
            +N      L  A+++ RDL E
Sbjct: 268 VKNSSLEATLSVAMEKERDLSE 289


>At3g05130.1 68416.m00557 expressed protein ; expression supported
           by MPSS
          Length = 634

 Score = 32.7 bits (71), Expect = 0.63
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
 Frame = +1

Query: 268 DGITKQANI----SNEVQILTNE----LNAASGKLSSINELADQALKRAKVVYEEALGLY 423
           DG+ ++  +     NE++I+  E    +     KL  +NE      K  KV+ +  +GL 
Sbjct: 253 DGLKREIKVLLSEKNEMEIVKIEQKGVIEELERKLDKLNETVRSLTKEEKVLRDLVIGLE 312

Query: 424 AEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADLDRLIAE 543
             ++ ++  +  +  +  D+LG  RTI  K ++++RLI E
Sbjct: 313 KNLDESMEKESGM-MVEIDALGKERTI--KESEVERLIGE 349


>At3g20070.2 68416.m02539 expressed protein
          Length = 282

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 460 LRKLHEDSLGMNRTIDDKAADLDRLIAENEDTLKGLDEAIKRGRDLLEQGHDRQDE 627
           + KL  + + +    DDK  +  +L+ E E   K L E + + ++L+++ H R  E
Sbjct: 59  VEKLRNEIISIRSGRDDKFLECQKLLMEEELKNKSLSEEVVKLKELVQEEHPRNYE 114


>At3g20070.1 68416.m02538 expressed protein
          Length = 282

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 460 LRKLHEDSLGMNRTIDDKAADLDRLIAENEDTLKGLDEAIKRGRDLLEQGHDRQDE 627
           + KL  + + +    DDK  +  +L+ E E   K L E + + ++L+++ H R  E
Sbjct: 59  VEKLRNEIISIRSGRDDKFLECQKLLMEEELKNKSLSEEVVKLKELVQEEHPRNYE 114


>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 25/137 (18%), Positives = 57/137 (41%)
 Frame = +1

Query: 169 DSXAEKLENEARNIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGKL 348
           +  AEKL+NE   + +   +A      A    +  + ++  I +E++    E   +   +
Sbjct: 396 EKEAEKLKNELETVNEEKTQALKKEQDATSSVQRLLEEKKKILSELESSKEEEEKSKKAM 455

Query: 349 SSINELADQALKRAKVVYEEALGLYAEVNTTLLPDIKLRKLHEDSLGMNRTIDDKAADLD 528
            S+     +    ++ + E+ L    +   T + D+KL  +   +      +D+   ++D
Sbjct: 456 ESLASALHEVSSESRELKEKLLSRGDQNYETQIEDLKL-VIKATNNKYENMLDEARHEID 514

Query: 529 RLIAENEDTLKGLDEAI 579
            L+   E T K  + A+
Sbjct: 515 VLVNAVEQTKKQFESAM 531


>At3g62490.1 68416.m07021 expressed protein hypothetical proteins -
           Arabidopsis thaliana
          Length = 559

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
 Frame = +1

Query: 259 IAKDGITKQANISNEVQILTNELNAASGKLSSINELAD-QALKRAKVVYEEALGLYA--- 426
           + K+G  K A  S E   L N+L A   +   + +LAD +A    K   ++A  +YA   
Sbjct: 349 VLKEGYQKFARSSLETAALANDLIATYDRKLKL-KLADREAFDNRKKCADQAKAIYAKDM 407

Query: 427 EVNTTLLPDIKLRKLHEDSLGMN-RTIDDKAADLDRLIAENEDTLKGLDEAIKRGRDLLE 603
           +    L    ++ K    SL    + ++ + ADL + I++ +  L  + E  +R  + L 
Sbjct: 408 KEMAALRDAAEIHKAEMSSLNNEVKRLNSREADLQKEISDLQVALVAVKEHGERECNRL- 466

Query: 604 QGHDRQDELNDLLG 645
           +     +E  DL+G
Sbjct: 467 RSDQAANEQEDLVG 480


>At4g02880.1 68417.m00388 expressed protein
          Length = 552

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
 Frame = +1

Query: 169 DSXAEKLENEAR-NIRDIADKAFNTSXVANKIAKDGITKQANISNEVQILTNELNAASGK 345
           +  AEK + +A     D  DK      +     +        +  E  ILT E+N    +
Sbjct: 308 EKEAEKAKEDASIGGFDTLDKVEELKKMLEHAKEANDMAAGEVYGERSILTTEVNELENR 367

Query: 346 LSSINELADQALKRAKVVYEEALGLYAEVNTTL-LPDIKLRKLHEDSLGMNRTIDDKAAD 522
           L S++E  D +L    V+ E  + L   + T L + +   ++  E      +   ++ A 
Sbjct: 368 LISLSEERDNSL---SVLDEMRVDLEIRLATALGIKNAAEQEKQEKEGSARKAFAEQEAI 424

Query: 523 LDRLIAENEDTLKGLDEAIKRGRDLLEQG 609
           ++R++ E++   +  +E  K    L++ G
Sbjct: 425 MERVVQESKLLQQEAEENSKLREFLMDHG 453


>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
           PF04508 viral A-type inclusion protein repeat
          Length = 775

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
 Frame = +1

Query: 280 KQANISNEVQILTNELNAASGKLSSI-NELADQALKRAKVV-----YEEALGLYA-EVNT 438
           K +   N ++ + NELN   GKL SI N+L    L+ ++V+      EE+L     E++ 
Sbjct: 168 KISESENLLESIRNELNVTQGKLESIENDLKAAGLQESEVMEKLKSAEESLEQKGREIDE 227

Query: 439 TLLPDIKLRKLHE----DSLGMNRTIDDKAADLDRLIAENEDTLKGLDEAIKRGRDLLEQ 606
                ++L  LH+    DS    +   ++    D   +   + L+ L+  IK   + L +
Sbjct: 228 ATTKRMELEALHQSLSIDSEHRLQKAMEEFTSRDSEASSLTEKLRDLEGKIKSYEEQLAE 287

Query: 607 GHDRQDELNDLL 642
              +   L + L
Sbjct: 288 ASGKSSSLKEKL 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,279
Number of Sequences: 28952
Number of extensions: 285502
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3932545536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)