Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H03_e24_15.seq
         (1453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   3.7  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   4.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   4.9  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   8.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/68 (26%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
 Frame = +3

Query: 936  PPIPXPP-XPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGPDFPLPGEXKPE 1112
            PP+P P   P  P PS      P      P  P         P     P  P P    P 
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 1113 AXPXXXXP 1136
              P    P
Sbjct: 1210 VPPPSTAP 1217


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1066 NGXXPISLCP-GRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXPGR 1224
            N    I L P GR +P   PP   P     PP          P A P A  PGR
Sbjct: 346  NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA-IPGR 398



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 20/75 (26%), Positives = 23/75 (30%)
 Frame = +1

Query: 1036 PGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATX 1215
            PG    +LP  G    +  P   +P   PP   P    S P   PP       A P    
Sbjct: 396  PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP----SLPPSAPPSLPMGAPAAPPLPP 451

Query: 1216 PGRXXXPTSXGXPXA 1260
                  P   G P A
Sbjct: 452  SAPIAPPLPAGMPAA 466


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = +1

Query: 1078 PISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXPGRXXXPTSXG 1248
            PI   PG  +   + P   P     PP G P PF   P        PG    P + G
Sbjct: 507  PIPGAPGMPNLNMSQPPMVPPGMALPP-GMPAPFPGYPAVPAMPGIPGATAPPGAPG 562


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 519 LAGMQKYYTMNVFKNYENIMNEKYYKKYYVYFTITDCQITSY 394
           LAG   +Y+ N  K YENI+  K    Y  YF+     + S+
Sbjct: 391 LAGYPPFYSENPMKLYENILEGKV--NYPSYFSPASIDLLSH 430


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 373 PFLLLCLVIYRKKRPSAFIFEALKANFN*LLMHIIF*INSFNGFTN 236
           PFLL+C+  Y +  P  +   AL       L+H IF  N+  GF N
Sbjct: 493 PFLLICIFFYIQSSPPFYYGYALFPTIFLQLIHSIF-PNTKLGFKN 537


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 465 IMNEKYYKKYYVYFTITDC 409
           I+NE+ +K Y  Y  ITDC
Sbjct: 32  ILNERAFKHYKTYRRITDC 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,744,575
Number of Sequences: 5004
Number of extensions: 63165
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 810768624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)