BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_H03_e24_15.seq (1453 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.99 SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3 SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0 SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 4.0 SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.0 SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1) 29 7.0 SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) 29 7.0 SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0 SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 7.0 SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0 SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.3 SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.3 SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 29 9.3 >SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1572 Score = 32.3 bits (70), Expect = 0.99 Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 3/88 (3%) Frame = +1 Query: 967 PXFPP--XXNXXXPEXFFFXPXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPX 1140 P FPP + P P +P PG +P G + P R PP P Sbjct: 439 PRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPH 498 Query: 1141 XXXSPPXGXPPPFXXXPXA-XPRATXPG 1221 PP G P P P A PR PG Sbjct: 499 QRVPPP-GAPHPRVPPPGAPHPRVPPPG 525 Score = 31.9 bits (69), Expect = 1.3 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197 P +P PG +P G + P S +R P P PP G P P P A Sbjct: 389 PRVPSPGASHPRVPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPP-GAPHPRFPPPGAP 447 Query: 1198 XPRATXPG 1221 PR PG Sbjct: 448 HPRVPPPG 455 Score = 31.9 bits (69), Expect = 1.3 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197 P +P PG +P G + P R PP P PP G P P P A Sbjct: 399 PRVPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPP-GAPHPRVPPPGAP 457 Query: 1198 XPRATXPG 1221 PR PG Sbjct: 458 HPRVPPPG 465 Score = 31.9 bits (69), Expect = 1.3 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197 P +P PG +P G + P +R PP P PP G P P P A Sbjct: 469 PRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 527 Query: 1198 XPRATXPG 1221 PR PG Sbjct: 528 HPRVPPPG 535 Score = 31.5 bits (68), Expect = 1.7 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197 P +P PG +P G + P R PP P PP G P P P A Sbjct: 489 PRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 547 Query: 1198 XPRATXPG 1221 PR PG Sbjct: 548 HPRVPPPG 555 Score = 31.5 bits (68), Expect = 1.7 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXP-XA 1197 P +P PG +P G + P S R PP P PP G P P P Sbjct: 529 PRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPPP-GAPHPRVPPPGTP 587 Query: 1198 XPRATXPG 1221 PR PG Sbjct: 588 HPRVPPPG 595 Score = 31.1 bits (67), Expect = 2.3 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197 P +P PG +P G + P R PP P PP G P P P A Sbjct: 479 PRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 537 Query: 1198 XPRATXPG 1221 PR PG Sbjct: 538 HPRVPPPG 545 Score = 30.7 bits (66), Expect = 3.0 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197 P +P PG P G + P R PP P PP G P P P A Sbjct: 429 PRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 487 Query: 1198 XPRATXPG 1221 PR PG Sbjct: 488 HPRVPPPG 495 Score = 30.7 bits (66), Expect = 3.0 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197 P +P PG +P G + P R PP P PP G P P P A Sbjct: 539 PRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPP-GTPHPRVPPPGAP 597 Query: 1198 XPRATXPG 1221 P+ PG Sbjct: 598 HPKVPPPG 605 Score = 29.1 bits (62), Expect = 9.3 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Frame = +1 Query: 1021 PXLPXPGEXXXSL-PXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA 1197 P +P PG + P P PG P R PP P PP G P P P A Sbjct: 409 PRVPPPGASHQRVRPPGAPHPRVPPPGAPHP-RFPPPGAPHPRVPPP-GAPHPRVPPPGA 466 Query: 1198 -XPRATXPG 1221 PR PG Sbjct: 467 PHPRVPPPG 475 Score = 29.1 bits (62), Expect = 9.3 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Frame = +1 Query: 1027 LPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAX-P 1203 +P PG +P G + P R PP P PP G P P P A P Sbjct: 501 VPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGASHP 559 Query: 1204 RATXPG 1221 R PG Sbjct: 560 RVPPPG 565 Score = 29.1 bits (62), Expect = 9.3 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Frame = +1 Query: 1021 PXLPXPGEXXXSLPXNGX-XPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA 1197 P +P PG +P G P PG P+ PP PP G P P P A Sbjct: 519 PRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGA--SHPRVPPPGAPHPRVPPPGA 576 Query: 1198 -XPRATXPG 1221 PR PG Sbjct: 577 PHPRVPPPG 585 >SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 779 Score = 31.1 bits (67), Expect = 2.3 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +1 Query: 1108 PKRTPPXXXPXXXXSPPXGXPPP 1176 P+R PP P PP G PPP Sbjct: 172 PRRLPPQLPPSSSLPPPFGEPPP 194 >SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 669 Score = 30.7 bits (66), Expect = 3.0 Identities = 21/77 (27%), Positives = 22/77 (28%) Frame = -3 Query: 1364 GXGXRGGGPXAXXXVXXAXGXAQGRXXPXXXRXXXAXGXPWXVGXLXRPGXVARGXAKGX 1185 G G GGG A A G G G G G A G G Sbjct: 257 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGA 316 Query: 1184 KXKGGGXPXGGLXXXXG 1134 GGG GG+ G Sbjct: 317 TGGGGGATGGGVGATGG 333 >SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 382 Score = 30.3 bits (65), Expect = 4.0 Identities = 16/41 (39%), Positives = 17/41 (41%) Frame = +1 Query: 1054 SLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPP 1176 S+P G P PG P PP P PP G PPP Sbjct: 246 SMPPPGMPP----PGMMPPPGFPPMGMPGMGGMPPPGMPPP 282 >SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 290 Score = 30.3 bits (65), Expect = 4.0 Identities = 19/67 (28%), Positives = 21/67 (31%) Frame = +3 Query: 936 PPIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGPDFPLPGEXKPEA 1115 P P PP P AP P P + P PP P P+ P P P Sbjct: 136 PNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPY 195 Query: 1116 XPXXXXP 1136 P P Sbjct: 196 PPPPNAP 202 Score = 29.1 bits (62), Expect = 9.3 Identities = 18/59 (30%), Positives = 20/59 (33%) Frame = +3 Query: 936 PPIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGPDFPLPGEXKPE 1112 PP P PP P P P P P PPP P P+ P P P+ Sbjct: 185 PPYPPPPNPPYPPPPNAPNPPPPN---PPYPPPPNAPNPPYPPPPNAPNPPYPPPPNPQ 240 >SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1) Length = 386 Score = 29.5 bits (63), Expect = 7.0 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -1 Query: 148 SVISDITENYLQVIF*TKPRYLSTSISANIPRNNIPS 38 S+ISDI + + IF RYL T+ S + R+NI S Sbjct: 84 SLISDIVKRIYESIFAQLYRYLETNYSRHCVRSNISS 120 >SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) Length = 172 Score = 29.5 bits (63), Expect = 7.0 Identities = 14/47 (29%), Positives = 17/47 (36%) Frame = +1 Query: 1078 PISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXP 1218 P + P +P T P +PP G P P P AT P Sbjct: 126 PAATTPPTAAPAATTPPTAAPAATTPPTGAPAA-TTPPTGAPAATTP 171 >SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 67 Score = 29.5 bits (63), Expect = 7.0 Identities = 14/47 (29%), Positives = 17/47 (36%) Frame = +1 Query: 1078 PISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXP 1218 P + P +P T P +PP G P P P AT P Sbjct: 16 PAATTPPTAAPAATTPPTAAPAATTPPTGAPAA-TTPPTGAPAATTP 61 >SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) Length = 1439 Score = 29.5 bits (63), Expect = 7.0 Identities = 15/53 (28%), Positives = 18/53 (33%) Frame = +1 Query: 1096 GRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXPGRXXXPTSXGXP 1254 G +P PP P +P G P P P A P + PT P Sbjct: 529 GVPTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSAVPTPATAP 581 >SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2202 Score = 29.5 bits (63), Expect = 7.0 Identities = 14/43 (32%), Positives = 14/43 (32%) Frame = -3 Query: 1235 GXLXRPGXVARGXAKGXKXKGGGXPXGGLXXXXGXXXGGVRFG 1107 G G G G G G GGL G GGV G Sbjct: 556 GTTSSGGNTGSGTTTGGVNTGSGTTTGGLNTGSGTTTGGVNSG 598 >SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1000 Score = 29.1 bits (62), Expect = 9.3 Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 3/78 (3%) Frame = +1 Query: 1030 PXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXP---XAX 1200 P E P P + PG P PP PP G P P A Sbjct: 894 PRRNESPSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAP 953 Query: 1201 PRATXPGRXXXPTSXGXP 1254 P PG P G P Sbjct: 954 PPPPPPGGSAPPPGGGAP 971 >SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 120 Score = 29.1 bits (62), Expect = 9.3 Identities = 14/47 (29%), Positives = 17/47 (36%) Frame = +1 Query: 1078 PISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXP 1218 P + P +P T P +PP G P P P AT P Sbjct: 69 PAATTPPTVAPAATTPPTAAPAATTPPTGAPAA-TTPPTGAPAATTP 114 >SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) Length = 605 Score = 29.1 bits (62), Expect = 9.3 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Frame = +3 Query: 939 PIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGP-----DFPLPGEX 1103 P P PP P K T+ F P PP Q P + P+P + Sbjct: 353 PAPVPPSPNLGYSRTEKVPGGPTYTFGPPPPAASNAKPAQYTQYTAPAPVVYNPPVPPKA 412 Query: 1104 KPEAXPXXXXP 1136 P A P P Sbjct: 413 LPAAAPHYEKP 423 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 29,373,900 Number of Sequences: 59808 Number of extensions: 512181 Number of successful extensions: 1520 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 815 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1301 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4671635246 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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