Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H03_e24_15.seq
(1453 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.99
SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 4.0
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.0
SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1) 29 7.0
SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) 29 7.0
SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 7.0
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.3
SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.3
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 29 9.3
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 32.3 bits (70), Expect = 0.99
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Frame = +1
Query: 967 PXFPP--XXNXXXPEXFFFXPXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPX 1140
P FPP + P P +P PG +P G + P R PP P
Sbjct: 439 PRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPH 498
Query: 1141 XXXSPPXGXPPPFXXXPXA-XPRATXPG 1221
PP G P P P A PR PG
Sbjct: 499 QRVPPP-GAPHPRVPPPGAPHPRVPPPG 525
Score = 31.9 bits (69), Expect = 1.3
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197
P +P PG +P G + P S +R P P PP G P P P A
Sbjct: 389 PRVPSPGASHPRVPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPP-GAPHPRFPPPGAP 447
Query: 1198 XPRATXPG 1221
PR PG
Sbjct: 448 HPRVPPPG 455
Score = 31.9 bits (69), Expect = 1.3
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197
P +P PG +P G + P R PP P PP G P P P A
Sbjct: 399 PRVPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPP-GAPHPRVPPPGAP 457
Query: 1198 XPRATXPG 1221
PR PG
Sbjct: 458 HPRVPPPG 465
Score = 31.9 bits (69), Expect = 1.3
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197
P +P PG +P G + P +R PP P PP G P P P A
Sbjct: 469 PRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 527
Query: 1198 XPRATXPG 1221
PR PG
Sbjct: 528 HPRVPPPG 535
Score = 31.5 bits (68), Expect = 1.7
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197
P +P PG +P G + P R PP P PP G P P P A
Sbjct: 489 PRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 547
Query: 1198 XPRATXPG 1221
PR PG
Sbjct: 548 HPRVPPPG 555
Score = 31.5 bits (68), Expect = 1.7
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXP-XA 1197
P +P PG +P G + P S R PP P PP G P P P
Sbjct: 529 PRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPPP-GAPHPRVPPPGTP 587
Query: 1198 XPRATXPG 1221
PR PG
Sbjct: 588 HPRVPPPG 595
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197
P +P PG +P G + P R PP P PP G P P P A
Sbjct: 479 PRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 537
Query: 1198 XPRATXPG 1221
PR PG
Sbjct: 538 HPRVPPPG 545
Score = 30.7 bits (66), Expect = 3.0
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197
P +P PG P G + P R PP P PP G P P P A
Sbjct: 429 PRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGAP 487
Query: 1198 XPRATXPG 1221
PR PG
Sbjct: 488 HPRVPPPG 495
Score = 30.7 bits (66), Expect = 3.0
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA- 1197
P +P PG +P G + P R PP P PP G P P P A
Sbjct: 539 PRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPP-GTPHPRVPPPGAP 597
Query: 1198 XPRATXPG 1221
P+ PG
Sbjct: 598 HPKVPPPG 605
Score = 29.1 bits (62), Expect = 9.3
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Frame = +1
Query: 1021 PXLPXPGEXXXSL-PXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA 1197
P +P PG + P P PG P R PP P PP G P P P A
Sbjct: 409 PRVPPPGASHQRVRPPGAPHPRVPPPGAPHP-RFPPPGAPHPRVPPP-GAPHPRVPPPGA 466
Query: 1198 -XPRATXPG 1221
PR PG
Sbjct: 467 PHPRVPPPG 475
Score = 29.1 bits (62), Expect = 9.3
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +1
Query: 1027 LPXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAX-P 1203
+P PG +P G + P R PP P PP G P P P A P
Sbjct: 501 VPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPP-GAPHPRVPPPGASHP 559
Query: 1204 RATXPG 1221
R PG
Sbjct: 560 RVPPPG 565
Score = 29.1 bits (62), Expect = 9.3
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Frame = +1
Query: 1021 PXLPXPGEXXXSLPXNGX-XPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXA 1197
P +P PG +P G P PG P+ PP PP G P P P A
Sbjct: 519 PRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGA--SHPRVPPPGAPHPRVPPPGA 576
Query: 1198 -XPRATXPG 1221
PR PG
Sbjct: 577 PHPRVPPPG 585
>SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 31.1 bits (67), Expect = 2.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 1108 PKRTPPXXXPXXXXSPPXGXPPP 1176
P+R PP P PP G PPP
Sbjct: 172 PRRLPPQLPPSSSLPPPFGEPPP 194
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.7 bits (66), Expect = 3.0
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = -3
Query: 1364 GXGXRGGGPXAXXXVXXAXGXAQGRXXPXXXRXXXAXGXPWXVGXLXRPGXVARGXAKGX 1185
G G GGG A A G G G G G A G G
Sbjct: 257 GGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGA 316
Query: 1184 KXKGGGXPXGGLXXXXG 1134
GGG GG+ G
Sbjct: 317 TGGGGGATGGGVGATGG 333
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 30.3 bits (65), Expect = 4.0
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +1
Query: 1054 SLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPP 1176
S+P G P PG P PP P PP G PPP
Sbjct: 246 SMPPPGMPP----PGMMPPPGFPPMGMPGMGGMPPPGMPPP 282
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 4.0
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = +3
Query: 936 PPIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGPDFPLPGEXKPEA 1115
P P PP P AP P P + P PP P P+ P P P
Sbjct: 136 PNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPY 195
Query: 1116 XPXXXXP 1136
P P
Sbjct: 196 PPPPNAP 202
Score = 29.1 bits (62), Expect = 9.3
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +3
Query: 936 PPIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGPDFPLPGEXKPE 1112
PP P PP P P P P P PPP P P+ P P P+
Sbjct: 185 PPYPPPPNPPYPPPPNAPNPPPPN---PPYPPPPNAPNPPYPPPPNAPNPPYPPPPNPQ 240
>SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)
Length = 386
Score = 29.5 bits (63), Expect = 7.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 148 SVISDITENYLQVIF*TKPRYLSTSISANIPRNNIPS 38
S+ISDI + + IF RYL T+ S + R+NI S
Sbjct: 84 SLISDIVKRIYESIFAQLYRYLETNYSRHCVRSNISS 120
>SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)
Length = 172
Score = 29.5 bits (63), Expect = 7.0
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +1
Query: 1078 PISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXP 1218
P + P +P T P +PP G P P P AT P
Sbjct: 126 PAATTPPTAAPAATTPPTAAPAATTPPTGAPAA-TTPPTGAPAATTP 171
>SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.5 bits (63), Expect = 7.0
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +1
Query: 1078 PISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXP 1218
P + P +P T P +PP G P P P AT P
Sbjct: 16 PAATTPPTAAPAATTPPTAAPAATTPPTGAPAA-TTPPTGAPAATTP 61
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 29.5 bits (63), Expect = 7.0
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +1
Query: 1096 GRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXPGRXXXPTSXGXP 1254
G +P PP P +P G P P P A P + PT P
Sbjct: 529 GVPTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSAVPTPATAP 581
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 29.5 bits (63), Expect = 7.0
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = -3
Query: 1235 GXLXRPGXVARGXAKGXKXKGGGXPXGGLXXXXGXXXGGVRFG 1107
G G G G G G GGL G GGV G
Sbjct: 556 GTTSSGGNTGSGTTTGGVNTGSGTTTGGLNTGSGTTTGGVNSG 598
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.1 bits (62), Expect = 9.3
Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Frame = +1
Query: 1030 PXPGEXXXSLPXNGXXPISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXP---XAX 1200
P E P P + PG P PP PP G P P A
Sbjct: 894 PRRNESPSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAP 953
Query: 1201 PRATXPGRXXXPTSXGXP 1254
P PG P G P
Sbjct: 954 PPPPPPGGSAPPPGGGAP 971
>SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.1 bits (62), Expect = 9.3
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +1
Query: 1078 PISLCPGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXP 1218
P + P +P T P +PP G P P P AT P
Sbjct: 69 PAATTPPTVAPAATTPPTAAPAATTPPTGAPAA-TTPPTGAPAATTP 114
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 29.1 bits (62), Expect = 9.3
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Frame = +3
Query: 939 PIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGP-----DFPLPGEX 1103
P P PP P K T+ F P PP Q P + P+P +
Sbjct: 353 PAPVPPSPNLGYSRTEKVPGGPTYTFGPPPPAASNAKPAQYTQYTAPAPVVYNPPVPPKA 412
Query: 1104 KPEAXPXXXXP 1136
P A P P
Sbjct: 413 LPAAAPHYEKP 423
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,373,900
Number of Sequences: 59808
Number of extensions: 512181
Number of successful extensions: 1520
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4671635246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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