Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H03_e24_15.seq
(1453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 32 0.88
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 30 3.6
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 30 4.7
Z93377-1|CAB07573.1| 340|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z83216-11|CAB05679.2| 404|Caenorhabditis elegans Hypothetical p... 29 6.2
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 29 6.2
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 29 8.2
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 29 8.2
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 29 8.2
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 29 8.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 8.2
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 8.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 8.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 8.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 8.2
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical protein
T10B10.1 protein.
Length = 428
Score = 32.3 bits (70), Expect = 0.88
Identities = 30/115 (26%), Positives = 39/115 (33%), Gaps = 3/115 (2%)
Frame = +2
Query: 1031 PXPEKXXXRSXTTAGXRFPSARGGKARSXPXXLXXPXFXEAPPXGXPPPSXXXLXRCXGX 1210
P P++ R+ ++G P + + P P APP PP+ R
Sbjct: 275 PCPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPA-TRAPPATRAPPATT---RAPPA 330
Query: 1211 PXRXAXXXXXPXGPPRXXXFXXXWGXHXPAXXQXPXXPSPA---PXXPXPGXPXP 1366
R A P P G PA Q P PSP+ P P P P P
Sbjct: 331 TTRPAPASQPPVREPETPDS----GYPSPAP-QEPAHPSPSYPSPSYPSPSYPSP 380
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein
Y49E10.10 protein.
Length = 425
Score = 31.5 bits (68), Expect = 1.5
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 945 PXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGP-DFPLPGEXKPE 1112
P PP AP P K P T P P + +AP + P P P PE
Sbjct: 183 PPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAPE 239
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 936 PPIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAP 1061
PP P P AP P+ P F P P P AP
Sbjct: 57 PPAPLPAYAPAPLPAYAPAPLPAPVFAAPAPAPVFAAPFAAP 98
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical protein
R11F4.3 protein.
Length = 418
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +3
Query: 939 PIPXPPXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGPDFP 1088
PIP PP P P T P PPP R + P + P P
Sbjct: 155 PIPQPPRFAEVPPIPDAPTNPPTTTTPPPPPPTRAPRPIIPTEVRRPQMP 204
>Z93377-1|CAB07573.1| 340|Caenorhabditis elegans Hypothetical protein
F13A7.1 protein.
Length = 340
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Frame = -3
Query: 1364 GXGXRGGGPXAXXXVXXAXGXAQGRXXPXXXRXXXAXGXPWXVGXLXRPGXVARG-XAKG 1188
G G GGG A A G +Q A G PG +A+G A G
Sbjct: 143 GAGGGGGGASAGGGAAGAGGASQ-MTAAQGSAAQGAGGGGAVSQISAAPGSMAQGVGAPG 201
Query: 1187 XKXKGGGX--PXGGLXXXXGXXXGG 1119
+GGG P + G GG
Sbjct: 202 SAAQGGGAQGPVSQISVTQGGRGGG 226
>Z83216-11|CAB05679.2| 404|Caenorhabditis elegans Hypothetical
protein C08F11.13 protein.
Length = 404
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 480 KNYENIMNEKYYKKYYVYFTITDCQITSYYVLYLI 376
K+ +N+ + KK+Y++F + +C I S LY+I
Sbjct: 320 KSPKNVETRFFMKKWYLWFLLINCVIWSSIPLYVI 354
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 621 TMKYIEFAYYYYHLVXMTQINPVCTMCXLRXXYHXLXLAQXDSCAPXIAPFPSL 782
T KY +YYYH +T P T C R + ++ S + + P+L
Sbjct: 311 TAKYFLIHHYYYHSTDLTSSAPAST-CSTRWSPMTVSTSESSSTSESSSGMPTL 363
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical protein
F15H10.2 protein.
Length = 316
Score = 29.1 bits (62), Expect = 8.2
Identities = 25/99 (25%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Frame = +2
Query: 1073 GXRFPS-ARGGKARSXPXXLXXPXFXEAPPXGXPPPSXXXLXRCXGXPXRXAXXXXXP-- 1243
G + PS A G +S L P PP P G P + P
Sbjct: 185 GQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGP 244
Query: 1244 XGPPRXXXFXXXWGXHXPAXXQXPXXPSPAPXXPXPGXP 1360
GPP G A P P P PG P
Sbjct: 245 AGPPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAP 283
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical protein
F15H10.1 protein.
Length = 316
Score = 29.1 bits (62), Expect = 8.2
Identities = 25/99 (25%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Frame = +2
Query: 1073 GXRFPS-ARGGKARSXPXXLXXPXFXEAPPXGXPPPSXXXLXRCXGXPXRXAXXXXXP-- 1243
G + PS A G +S L P PP P G P + P
Sbjct: 185 GQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGP 244
Query: 1244 XGPPRXXXFXXXWGXHXPAXXQXPXXPSPAPXXPXPGXP 1360
GPP G A P P P PG P
Sbjct: 245 AGPPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAP 283
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 29.1 bits (62), Expect = 8.2
Identities = 25/99 (25%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Frame = +2
Query: 1073 GXRFPS-ARGGKARSXPXXLXXPXFXEAPPXGXPPPSXXXLXRCXGXPXRXAXXXXXP-- 1243
G + PS A G +S L P PP P G P + P
Sbjct: 185 GQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGP 244
Query: 1244 XGPPRXXXFXXXWGXHXPAXXQXPXXPSPAPXXPXPGXP 1360
GPP G A P P P PG P
Sbjct: 245 AGPPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAP 283
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 29.1 bits (62), Expect = 8.2
Identities = 25/99 (25%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Frame = +2
Query: 1073 GXRFPS-ARGGKARSXPXXLXXPXFXEAPPXGXPPPSXXXLXRCXGXPXRXAXXXXXP-- 1243
G + PS A G +S L P PP P G P + P
Sbjct: 185 GQKGPSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGP 244
Query: 1244 XGPPRXXXFXXXWGXHXPAXXQXPXXPSPAPXXPXPGXP 1360
GPP G A P P P PG P
Sbjct: 245 AGPPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAP 283
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 8.2
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 1093 PGRXSPKRTPPXXXPXXXXSPPXGXPPPFXXXPXAXPRATXP 1218
P R P R PP P PP P P P P + P
Sbjct: 151 PPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIP 192
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +3
Query: 936 PPIPXP--PXPXAPXPSXXKXXXPXTFFFXPXPPPXRRXXXLAPXQRXGPDFPLPGEXKP 1109
PP P P P P AP P+ P P PPP P P P P +P
Sbjct: 95 PPCPLPYIPEPVAPVPAPAPVYEPYACAAPPCPPP---TPVYEPYACAAPPCPAPVAPQP 151
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 8.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 1096 GRXSPKRTPPXXXPXXXXSPPXGXPP 1173
G P+R+PP P SPP G PP
Sbjct: 483 GPRGPRRSPPTGSP-PTGSPPTGAPP 507
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 8.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 1096 GRXSPKRTPPXXXPXXXXSPPXGXPP 1173
G P+R+PP P SPP G PP
Sbjct: 504 GPRGPRRSPPTGSP-PTGSPPTGAPP 528
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 8.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 1096 GRXSPKRTPPXXXPXXXXSPPXGXPP 1173
G P+R+PP P SPP G PP
Sbjct: 489 GPRGPRRSPPTGSP-PTGSPPTGAPP 513
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,196,199
Number of Sequences: 27780
Number of extensions: 450108
Number of successful extensions: 1394
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4152264522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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