Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_H02_e16_16.seq
         (1445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   211   2e-55
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   118   2e-27
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   109   9e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    86   1e-17
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   6.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  211 bits (515), Expect = 2e-55
 Identities = 115/224 (51%), Positives = 130/224 (58%)
 Frame = +3

Query: 6   HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
           HYTEGAEL D+ L VVR+EAE+CD LQGFQ                   KIREEYPDR+M
Sbjct: 105 HYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMM 164

Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
            T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL  I   TLK+ +P+Y D
Sbjct: 165 ATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDD 224

Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
           LNHLVS          + P  +     KLAVNMVPFPRLHFFM  F  P           
Sbjct: 225 LNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGF-APLAAIGSSSFQA 283

Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
              P    +   A NMM     R  GR LTV         MKEV
Sbjct: 284 VSVPELTQQMFDANNMMVAADPR-HGRYLTVAALFRGKVSMKEV 326


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  118 bits (284), Expect = 2e-27
 Identities = 66/209 (31%), Positives = 102/209 (48%)
 Frame = +3

Query: 6   HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
           HYT G E++DS L  +R+ A++C  LQGF                    ++  EY  +  
Sbjct: 111 HYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSN 170

Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
             +SV P+P+VS +VVEPYN+ L+ H  ++N+D T+ +DNEA YDIC R L +  PTY +
Sbjct: 171 LQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYEN 230

Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
           LN L++          +   S+     +   N+VP+PR+HF +  +  P           
Sbjct: 231 LNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYS-PIVSAAKAFHES 289

Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXL 632
                  ++C    N M +   R TGR +
Sbjct: 290 NSVQEITNQCFEPYNQMVKCDPR-TGRYM 317


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  109 bits (262), Expect = 9e-25
 Identities = 55/161 (34%), Positives = 84/161 (52%)
 Frame = +3

Query: 6   HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
           HYT G ELVD     +R+ A++C  LQGF                    ++  EY  +  
Sbjct: 107 HYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSK 166

Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
             +SV P+P+VS +VVEPYN+ L+ H  ++  D T+ +DNE+ YDIC R L +  P+Y +
Sbjct: 167 LQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYEN 226

Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHF 488
           LN L++          +   S+     +   N+VP+PR+HF
Sbjct: 227 LNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHF 267


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 1/166 (0%)
 Frame = +3

Query: 9   YTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMN 188
           Y+    + +  + ++ +EA+  D L+GF                    ++ + YP +I+ 
Sbjct: 108 YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQ 167

Query: 189 TYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
           TYSV P S  VSD VV+PYN+ L++ +L  N D    +DN AL  I    L    PT+  
Sbjct: 168 TYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQ 227

Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRF 503
            N LVS          + P  +      +  +++P PR HF +  +
Sbjct: 228 QNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSY 273


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 79  VYKD-SNSHTPSEAVLAPVWAPFSSLKY 159
           VYK  S  HT S   L  +W PFS L Y
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSELHY 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,758
Number of Sequences: 5004
Number of extensions: 60768
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 806794268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)