Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_H02_e16_16.seq
(1445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 228 6e-60
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 227 1e-59
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 227 1e-59
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 227 2e-59
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 226 3e-59
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 226 3e-59
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 225 6e-59
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 225 7e-59
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 223 2e-58
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 120 2e-27
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 120 3e-27
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 120 3e-27
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 120 3e-27
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 120 3e-27
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 119 4e-27
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 119 4e-27
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 81 2e-15
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 80 3e-15
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 33 0.62
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 32 0.81
At2g41600.2 68415.m05140 expressed protein 29 7.6
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 228 bits (558), Expect = 6e-60
Identities = 122/224 (54%), Positives = 135/224 (60%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+DS L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKLSTP++GD
Sbjct: 165 MTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGD 224
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRN 283
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
P + AKNMM R GR LT KEV
Sbjct: 284 LTVPELTQQMWDAKNMMCAADPR-HGRYLTASAMFRGKMSTKEV 326
Score = 52.4 bits (120), Expect = 7e-07
Identities = 49/154 (31%), Positives = 58/154 (37%)
Frame = +1
Query: 388 TMSGVTTCLRFPGQLNADLRSWQ*TWCHSHVCISSCPGFGSPHVPRQSAVPRAXRSRAHT 567
TMSGVT CLRFPGQLN+DLR GF +P R S R T
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRNLTVPELT 290
Query: 568 ADVXTLRT*WAGVXPAXXGXTLPLAXXFRGRXL*KKSDXAXCLXFRXRNXXXXFXEWXPE 747
+ + P G L + FRG+ K+ D L + +N F EW P
Sbjct: 291 QQMWDAKNMMCAADPRH-GRYLTASAMFRGKMSTKEVDEQM-LNVQNKNSSY-FVEWIPN 347
Query: 748 XXXKTXXXXTXRPXGXKXGGTXIGNXXXIXNFXR 849
T P G K T IGN I R
Sbjct: 348 NVKSTVCDIP--PTGLKMASTFIGNSTSIQEMFR 379
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 227 bits (556), Expect = 1e-59
Identities = 122/229 (53%), Positives = 135/229 (58%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+DS L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+ PT+GD
Sbjct: 165 MTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGD 224
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYSA 283
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEVRXSXM 692
P + AKNMM R GR LT KEV M
Sbjct: 284 LSVPELTQQMWDAKNMMCAADPR-HGRYLTASAVFRGKMSTKEVDEQMM 331
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 227 bits (555), Expect = 1e-59
Identities = 121/224 (54%), Positives = 135/224 (60%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+DS L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GD
Sbjct: 165 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGD 224
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRA 283
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
P + AKNMM R GR LT KEV
Sbjct: 284 LTVPELTQQMWDAKNMMCAADPR-HGRYLTASAMFRGKMSTKEV 326
Score = 54.0 bits (124), Expect = 2e-07
Identities = 49/154 (31%), Positives = 59/154 (38%)
Frame = +1
Query: 388 TMSGVTTCLRFPGQLNADLRSWQ*TWCHSHVCISSCPGFGSPHVPRQSAVPRAXRSRAHT 567
TMSGVT CLRFPGQLN+DLR GF +P R S RA T
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRALTVPELT 290
Query: 568 ADVXTLRT*WAGVXPAXXGXTLPLAXXFRGRXL*KKSDXAXCLXFRXRNXXXXFXEWXPE 747
+ + P G L + FRG+ K+ D + + +N F EW P
Sbjct: 291 QQMWDAKNMMCAADPRH-GRYLTASAMFRGKMSTKEVDEQM-INVQNKNSSY-FVEWIPN 347
Query: 748 XXXKTXXXXTXRPXGXKXGGTXIGNXXXIXNFXR 849
T P G K T IGN I R
Sbjct: 348 NVKSTVCDIP--PTGLKMASTFIGNSTSIQEMFR 379
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 227 bits (554), Expect = 2e-59
Identities = 121/224 (54%), Positives = 135/224 (60%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+D+ L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 106 HYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 165
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKLSTP++GD
Sbjct: 166 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGD 225
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 226 LNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYIS 284
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
P + AKNMM R GR LT KEV
Sbjct: 285 LTVPELTQQMWDAKNMMCAADPR-HGRYLTASAMFRGKMSTKEV 327
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 226 bits (552), Expect = 3e-59
Identities = 120/224 (53%), Positives = 135/224 (60%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+DS L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GD
Sbjct: 165 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGD 224
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRS 283
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
P + +KNMM R GR LT KEV
Sbjct: 284 LTVPELTQQMWDSKNMMCAADPR-HGRYLTASAMFRGKMSTKEV 326
Score = 53.2 bits (122), Expect = 4e-07
Identities = 49/154 (31%), Positives = 59/154 (38%)
Frame = +1
Query: 388 TMSGVTTCLRFPGQLNADLRSWQ*TWCHSHVCISSCPGFGSPHVPRQSAVPRAXRSRAHT 567
TMSGVT CLRFPGQLN+DLR GF +P R S R+ T
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRSLTVPELT 290
Query: 568 ADVXTLRT*WAGVXPAXXGXTLPLAXXFRGRXL*KKSDXAXCLXFRXRNXXXXFXEWXPE 747
+ + P G L + FRG+ K+ D L + +N F EW P
Sbjct: 291 QQMWDSKNMMCAADPRH-GRYLTASAMFRGKMSTKEVDEQM-LNVQNKNSSY-FVEWIPN 347
Query: 748 XXXKTXXXXTXRPXGXKXGGTXIGNXXXIXNFXR 849
T P G K T IGN I R
Sbjct: 348 NVKSTVCDIP--PTGLKMASTFIGNSTSIQEMFR 379
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 226 bits (552), Expect = 3e-59
Identities = 120/224 (53%), Positives = 135/224 (60%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+DS L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GD
Sbjct: 165 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGD 224
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRS 283
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
P + +KNMM R GR LT KEV
Sbjct: 284 LTVPELTQQMWDSKNMMCAADPR-HGRYLTASAMFRGKMSTKEV 326
Score = 53.2 bits (122), Expect = 4e-07
Identities = 49/154 (31%), Positives = 59/154 (38%)
Frame = +1
Query: 388 TMSGVTTCLRFPGQLNADLRSWQ*TWCHSHVCISSCPGFGSPHVPRQSAVPRAXRSRAHT 567
TMSGVT CLRFPGQLN+DLR GF +P R S R+ T
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRSLTVPELT 290
Query: 568 ADVXTLRT*WAGVXPAXXGXTLPLAXXFRGRXL*KKSDXAXCLXFRXRNXXXXFXEWXPE 747
+ + P G L + FRG+ K+ D L + +N F EW P
Sbjct: 291 QQMWDSKNMMCAADPRH-GRYLTASAMFRGKMSTKEVDEQM-LNVQNKNSSY-FVEWIPN 347
Query: 748 XXXKTXXXXTXRPXGXKXGGTXIGNXXXIXNFXR 849
T P G K T IGN I R
Sbjct: 348 NVKSTVCDIP--PTGLKMASTFIGNSTSIQEMFR 379
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 225 bits (550), Expect = 6e-59
Identities = 120/224 (53%), Positives = 135/224 (60%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+D+ L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 106 HYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 165
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKLSTP++GD
Sbjct: 166 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGD 225
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 226 LNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYIS 284
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
P + +KNMM R GR LT KEV
Sbjct: 285 LTVPELTQQMWDSKNMMCAADPR-HGRYLTASAIFRGQMSTKEV 327
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 225 bits (549), Expect = 7e-59
Identities = 119/224 (53%), Positives = 135/224 (60%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+D+ L VVRKEAE+CDCLQGFQ KIREEYPDR+M
Sbjct: 105 HYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GD
Sbjct: 165 LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGD 224
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYRA 283
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEV 677
P + +KNMM R GR LT KEV
Sbjct: 284 LTVPELTQQMWDSKNMMCAADPR-HGRYLTASAMFRGKMSTKEV 326
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 223 bits (546), Expect = 2e-58
Identities = 121/229 (52%), Positives = 134/229 (58%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYTEGAEL+DS L VVRKEAE+ DCLQGFQ KIREEYPDR+M
Sbjct: 105 HYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDICFRTLKL+ PT+GD
Sbjct: 165 MTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGD 224
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LNHL+S + P + KLAVN++PFPRLHFFM F P
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYSA 283
Query: 546 XPFPSSHSRCSXAKNMMGRXXTRVTGRXLTVGXHXPXSXXMKEVRXSXM 692
P + AKNMM R GR LT KEV M
Sbjct: 284 LSVPELTQQMWDAKNMMCAADPR-HGRYLTASAVFRGKLSTKEVDEQMM 331
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 120 bits (289), Expect = 2e-27
Identities = 64/203 (31%), Positives = 98/203 (48%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYT G E+VD+ L +RK A++C LQGF ++ ++ +
Sbjct: 107 HYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSK 166
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
+++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +
Sbjct: 167 LGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSN 226
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRFRLPXXXXXXXXXXX 545
LN L+S + ++ + N+VP+PR+HF + + P
Sbjct: 227 LNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSY-APVISSAKAYHEQ 285
Query: 546 XPFPSSHSRCSXAKNMMGRXXTR 614
P + NMM + R
Sbjct: 286 FSVPEITTSVFEPSNMMAKCDPR 308
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 120 bits (288), Expect = 3e-27
Identities = 61/166 (36%), Positives = 91/166 (54%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYT G E+VD L +RK A++C LQGF ++ +Y +
Sbjct: 107 HYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +
Sbjct: 167 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTN 226
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRF 503
LN LVS + ++ + N+VP+PR+HF + +
Sbjct: 227 LNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 272
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 120 bits (288), Expect = 3e-27
Identities = 61/166 (36%), Positives = 91/166 (54%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYT G E+VD L +RK A++C LQGF ++ +Y +
Sbjct: 107 HYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +
Sbjct: 167 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTN 226
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRF 503
LN LVS + ++ + N+VP+PR+HF + +
Sbjct: 227 LNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 272
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 120 bits (288), Expect = 3e-27
Identities = 61/166 (36%), Positives = 91/166 (54%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYT G E+VD L +RK A++C LQGF ++ +Y +
Sbjct: 107 HYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +
Sbjct: 167 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTN 226
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRF 503
LN LVS + ++ + N+VP+PR+HF + +
Sbjct: 227 LNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 272
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 120 bits (288), Expect = 3e-27
Identities = 61/166 (36%), Positives = 91/166 (54%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYT G E+VD L +RK A++C LQGF ++ +Y +
Sbjct: 107 HYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +
Sbjct: 167 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTN 226
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRF 503
LN LVS + ++ + N+VP+PR+HF + +
Sbjct: 227 LNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 272
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 119 bits (287), Expect = 4e-27
Identities = 60/166 (36%), Positives = 89/166 (53%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYT G E+VD L VRK A++C LQGF ++ +Y +
Sbjct: 107 HYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
+++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +
Sbjct: 167 LGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTN 226
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRF 503
LN L+S + ++ + N+VP+PR+HF + +
Sbjct: 227 LNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSY 272
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 119 bits (287), Expect = 4e-27
Identities = 60/166 (36%), Positives = 89/166 (53%)
Frame = +3
Query: 6 HYTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 185
HYT G E+VD L VRK A++C LQGF ++ +Y +
Sbjct: 107 HYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166
Query: 186 NTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
+++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +
Sbjct: 167 LGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTN 226
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFMPRF 503
LN L+S + ++ + N+VP+PR+HF + +
Sbjct: 227 LNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSY 272
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 80.6 bits (190), Expect = 2e-15
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 1/163 (0%)
Frame = +3
Query: 9 YTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMN 188
Y +G + + + ++ +EA+ D L+GF + + Y +++
Sbjct: 108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQ 167
Query: 189 TYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
TYSV P+ + SD VV+PYN+ L++ +L N D +DN AL I L L+ PT+
Sbjct: 168 TYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQ 227
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFM 494
N LVS + P + L +++P PR HF M
Sbjct: 228 TNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLM 270
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 80.2 bits (189), Expect = 3e-15
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 1/163 (0%)
Frame = +3
Query: 9 YTEGAELVDSXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMN 188
Y +G + + + ++ +EA+ D L+GF + + Y +++
Sbjct: 108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQ 167
Query: 189 TYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGD 365
TYSV P+ + SD VV+PYN+ L++ +L N D +DN AL I L L+ PT+
Sbjct: 168 TYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQ 227
Query: 366 LNHLVSLDHVWRYHLSQVPWSVECGSPKLAVNMVPFPRLHFFM 494
N LVS + P + L +++P PR HF M
Sbjct: 228 TNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLM 270
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 32.7 bits (71), Expect = 0.62
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +3
Query: 36 SXLXVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 215
+ + VVRKEAE+C+CLQ F RE D + Y V S +
Sbjct: 3 NSVGVVRKEAENCNCLQVF--FVSGSFKVDSVEAKKKEENFRETLRDMANSKYEYVKSFE 60
Query: 216 VSDTVVEP 239
+ D V+ P
Sbjct: 61 LEDEVMLP 68
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 32.3 bits (70), Expect = 0.81
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +3
Query: 219 SDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLST 350
S+ ++ P ++++ +LV D TY + + ++ D C R +K+ST
Sbjct: 77 SNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMST 120
>At2g41600.2 68415.m05140 expressed protein
Length = 164
Score = 29.1 bits (62), Expect = 7.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 392 CLALPPVSGSLVS*MRISEAGS--EHGAIPTSAFLHAPVSAPLTXRGSQQYRALT 550
C+ P +S L R+ E+GS H I ++ F+ + VSAP + G +R+ T
Sbjct: 100 CIKKPGLSSILQFHCRVYESGSGSSHFDIESAYFIRSFVSAPSSTYGDHFFRSQT 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,300,720
Number of Sequences: 28952
Number of extensions: 350925
Number of successful extensions: 765
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3826521024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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