Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G12_e95_14.seq
         (1534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   7.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   7.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   7.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   7.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   7.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 163 TSGPNVKDTPRSFSPQPCTSLSGSDPRAE 77
           T+GPN   T  +  P PCT  + +   AE
Sbjct: 418 TTGPNEIVTCTNCGPNPCTHTTTNGCTAE 446


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 163 TSGPNVKDTPRSFSPQPCTSLSGSDPRAE 77
           T+GPN   T  +  P PCT  + +   AE
Sbjct: 404 TTGPNEIVTCTNCGPNPCTHTTTNGCTAE 432


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 163 TSGPNVKDTPRSFSPQPCTSLSGSDPRAE 77
           T+GPN   T  +  P PCT  + +   AE
Sbjct: 438 TTGPNEIVTCTNCGPNPCTHTTTNGCTAE 466


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 163 TSGPNVKDTPRSFSPQPCTSLSGSDPRAE 77
           T+GPN   T  +  P PCT  + +   AE
Sbjct: 387 TTGPNEIVTCTNCGPNPCTHTTTNGCTAE 415


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 108 VQGWGENDRGVSFTFGPDVVSKFLNRHDLDLICRA 212
           VQ W      + F   P +   FL +H LDL+  A
Sbjct: 333 VQQWNSYWGILGFPSAPTIDGIFLPKHPLDLLREA 367


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 108 VQGWGENDRGVSFTFGPDVVSKFLNRHDLDLICRA 212
           VQ W      + F   P +   FL +H LDL+  A
Sbjct: 333 VQQWNSYWGILGFPSAPTIDGIFLPKHPLDLLREA 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,173
Number of Sequences: 438
Number of extensions: 6155
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53711625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)