Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G11_e87_13.seq
         (1470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               305   4e-83
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   3.1  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         30   4.1  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   30   5.4  
SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.4  
SB_51095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  305 bits (750), Expect = 4e-83
 Identities = 139/200 (69%), Positives = 162/200 (81%)
 Frame = +3

Query: 33  VLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 212
           +L L EEDV K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK         
Sbjct: 7   ILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIV 66

Query: 213 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 392
             E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV D
Sbjct: 67  TIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCD 126

Query: 393 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 572
           P  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAREVLR+R
Sbjct: 127 PRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMR 186

Query: 573 GVLSRDQRWDVVVDLFFYRD 632
           G +SR   W+++ DL+FYRD
Sbjct: 187 GSISRALPWEIMPDLYFYRD 206


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 387 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 482
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 648 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 553
           SH   GH        H N GH  E+HG S  H
Sbjct: 316 SHENHGHSHENHGHSHENHGHSHENHGHSHKH 347



 Score = 30.3 bits (65), Expect = 4.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 648 SHSLQGHDRRTSQRQHPNAGHD*EHHGVS 562
           SH   GH        H N GH  +HHG S
Sbjct: 323 SHENHGHSHENHGHSHENHGHSHKHHGHS 351



 Score = 29.5 bits (63), Expect = 7.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 648 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 553
           SH   GH  +     H N GH  E+HG S  H
Sbjct: 337 SHENHGHSHKHHGHSHDNHGHSHENHGHSHGH 368


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -3

Query: 616  KSTTTSQRWSRLRTPRSLNTSRANNHHIRPMECEDLVLHGIAMST-NL---RGESVLHKA 449
            K+TT   RWS+ +TP      ++   H   +    L+ HG   ST NL   + + VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 448  ITGMLTY 428
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 209 NSTSSEYKLFPCTPKINYVRTVTTAFINVRLHLEINIFRSQMGGRRKHLSHIFLAERKHX 30
           ++T+ +   + C   + +   V+       L +  N F  +  G RK++  +   E K  
Sbjct: 17  SATARQTLTYHCRQSVAWFNNVSMKKDKALLMIGSNEFEFKASGTRKNMPKVIRDECKGI 76

Query: 29  V--PNSCSPGD 3
           +   NSCSPGD
Sbjct: 77  LLTSNSCSPGD 87


>SB_51095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 68  HLSHIFLAERKHXVPNSCSPGD 3
           HL   FLAE      NSCSPGD
Sbjct: 40  HLEPAFLAEGFRVASNSCSPGD 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,620,665
Number of Sequences: 59808
Number of extensions: 643630
Number of successful extensions: 2865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2860
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4742061908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)