BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_G11_e87_13.seq (1470 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 305 4e-83 SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 3.1 SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 4.1 SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 30 5.4 SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4 SB_51095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1 >SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) Length = 328 Score = 305 bits (750), Expect = 4e-83 Identities = 139/200 (69%), Positives = 162/200 (81%) Frame = +3 Query: 33 VLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 212 +L L EEDV K LAA HLGA N +FQME YVYKR+ DG ++IN+++TWEK Sbjct: 7 ILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIV 66 Query: 213 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 392 E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV D Sbjct: 67 TIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCD 126 Query: 393 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 572 P DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVLR+R Sbjct: 127 PRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMR 186 Query: 573 GVLSRDQRWDVVVDLFFYRD 632 G +SR W+++ DL+FYRD Sbjct: 187 GSISRALPWEIMPDLYFYRD 206 >SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) Length = 432 Score = 30.7 bits (66), Expect = 3.1 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +3 Query: 387 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 482 LDP +HQPIT+ + I ++A TD+PL+F Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147 >SB_34021| Best HMM Match : Zip (HMM E-Value=0) Length = 808 Score = 30.3 bits (65), Expect = 4.1 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -1 Query: 648 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 553 SH GH H N GH E+HG S H Sbjct: 316 SHENHGHSHENHGHSHENHGHSHENHGHSHKH 347 Score = 30.3 bits (65), Expect = 4.1 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = -1 Query: 648 SHSLQGHDRRTSQRQHPNAGHD*EHHGVS 562 SH GH H N GH +HHG S Sbjct: 323 SHENHGHSHENHGHSHENHGHSHKHHGHS 351 Score = 29.5 bits (63), Expect = 7.1 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -1 Query: 648 SHSLQGHDRRTSQRQHPNAGHD*EHHGVSILH 553 SH GH + H N GH E+HG S H Sbjct: 337 SHENHGHSHKHHGHSHDNHGHSHENHGHSHGH 368 >SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) Length = 1772 Score = 29.9 bits (64), Expect = 5.4 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = -3 Query: 616 KSTTTSQRWSRLRTPRSLNTSRANNHHIRPMECEDLVLHGIAMST-NL---RGESVLHKA 449 K+TT RWS+ +TP ++ H + L+ HG ST NL + + VL++ Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453 Query: 448 ITGMLTY 428 G +TY Sbjct: 1454 ELGTMTY 1460 >SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 447 Score = 29.9 bits (64), Expect = 5.4 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = -2 Query: 209 NSTSSEYKLFPCTPKINYVRTVTTAFINVRLHLEINIFRSQMGGRRKHLSHIFLAERKHX 30 ++T+ + + C + + V+ L + N F + G RK++ + E K Sbjct: 17 SATARQTLTYHCRQSVAWFNNVSMKKDKALLMIGSNEFEFKASGTRKNMPKVIRDECKGI 76 Query: 29 V--PNSCSPGD 3 + NSCSPGD Sbjct: 77 LLTSNSCSPGD 87 >SB_51095| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 177 Score = 29.5 bits (63), Expect = 7.1 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = -2 Query: 68 HLSHIFLAERKHXVPNSCSPGD 3 HL FLAE NSCSPGD Sbjct: 40 HLEPAFLAEGFRVASNSCSPGD 61 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 34,620,665 Number of Sequences: 59808 Number of extensions: 643630 Number of successful extensions: 2865 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2860 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4742061908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -