Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G11_e87_13.seq
         (1470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   257   1e-68
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   249   3e-66
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   235   5e-62
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.83 
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    32   1.1  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   4.4  
At1g15530.1 68414.m01868 receptor lectin kinase, putative simila...    29   7.7  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  257 bits (630), Expect = 1e-68
 Identities = 116/199 (58%), Positives = 144/199 (72%)
 Frame = +3

Query: 36  LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 215
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEK          
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 216 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 395
            E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 396 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 575
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 576 VLSRDQRWDVVVDLFFYRD 632
            ++  Q+WDV+VDLFFYR+
Sbjct: 192 TIAAGQKWDVMVDLFFYRE 210


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  249 bits (610), Expect = 3e-66
 Identities = 112/195 (57%), Positives = 140/195 (71%)
 Frame = +3

Query: 48  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 227
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 228 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 407
            D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 408 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSR 587
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 588 DQRWDVVVDLFFYRD 632
            Q+WDV+VDLFFYR+
Sbjct: 197 AQKWDVMVDLFFYRE 211


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  235 bits (575), Expect = 5e-62
 Identities = 106/189 (56%), Positives = 134/189 (70%)
 Frame = +3

Query: 48  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 227
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 228 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 407
            D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 408 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLSR 587
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 588 DQRWDVVVD 614
            Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.83
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 369 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 518
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 236 HISWILHGDNSTSSEYKLFPCTPKINYVRT 147
           H +  + G N T+S Y   PC P +NY+RT
Sbjct: 79  HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 324 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 425
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At1g15530.1 68414.m01868 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 656

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 694 WKRRRQFMRNGLRMLNQLHHG 756
           W+RRRQ + +    LN LHHG
Sbjct: 456 WRRRRQVINDVAEGLNYLHHG 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,986,251
Number of Sequences: 28952
Number of extensions: 426115
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3903629760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)