Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G10_e79_14.seq
         (1502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    31   0.41 
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    30   0.72 
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    30   0.95 
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   5.1  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    27   8.9  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   8.9  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    27   8.9  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 398 DNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSD 514
           +  EKIR SATE T DF  +     + P+    ++SN D
Sbjct: 116 EKFEKIRASATEETKDFIKL-NEVNEFPSSDTSLESNQD 153


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +2

Query: 362 FFSFINKQHLND-DNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSDTHDGDIVK 538
           F S+I+K   N   N    +    E +D+ + +    EQ+       ++N D  DG    
Sbjct: 138 FISYIDKNPANILRNEANKKRERQEKSDEEQRLRLLDEQIKRAYESAQNNEDNKDGS--S 195

Query: 539 KETPVSRELATQKRHIEAQVHI 604
           +E PV  E+   K+    Q+++
Sbjct: 196 REQPVLHEIDLSKKGNPIQLNL 217


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
 Frame = +2

Query: 302 FSQPATLAIYD-PPSEY-----TYEIFFSFINKQHLNDDNLEKIRNSATENTDDFESIAT 463
           FS P T  I D   ++Y     T E+   F+ K   +  N +   +    NT    +  T
Sbjct: 322 FSNPHTKHIMDLVRTQYRNVLRTRELIPEFLEKIRSSYSNNQNFDSQNAFNTSAAGTAGT 381

Query: 464 NTEQLPTGRNQVKSNSDTHDGDIVKKETPVSRELATQKRHIEAQVHIP 607
             E +  G+N + ++++T   D   +   ++  ++ +    +  +H+P
Sbjct: 382 REETISNGQNGIVASAETSKKDDGVQSASLNASMSARSHARQRSIHVP 429


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 191 INKVNKYYSKMFYHCV*GTVKVLSSNRTTVARVPWTLVPNXLQXRGXPLV 42
           + K+ ++ SKM  HC  GTV +   N + + RV +    N  +  G  LV
Sbjct: 152 LRKILEHVSKM--HCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = +2

Query: 410 KIRNSATENTDDFESIATNTEQLPTGRNQVKSN-SDTHDGDIVKKETPVSRELA---TQK 577
           K +  +   T++ +  +TN+  LPT    V++N S +H+       T  +  L+   T+ 
Sbjct: 41  KAKTPSNHATEELQQSSTNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISPTKS 100

Query: 578 RHIEAQVHIPAVV--AKSTGAIPKDN 649
             + ++ ++ A V    ST A P+ N
Sbjct: 101 AAVSSEPNVEADVKSLSSTPAAPQLN 126


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
 Frame = +2

Query: 212 KKETERVRSQSVPGHSPEH--NEHHLGYNNRVFSQPATLAIYDPPSEYTYEIFFSFINKQ 385
           K+   R++  +    SP H  N H    N+R   Q  T         ++ E+     NK+
Sbjct: 58  KRRKRRLKGSNSDSDSPHHASNPHP---NSRQKHQHQTSKSVPRSQRFSRELNVKKENKK 114

Query: 386 HLNDDNLEKI--RNSATENTDDF-----ESIATNTEQLPTGRNQVKSNSDTHD--GDIVK 538
             +    ++   + S    T+D      +S+ TN+++L   RN+VK  S   +   + +K
Sbjct: 115 VFSSQTTKRQSRKQSTALTTNDTSIILDDSLHTNSKKLGKTRNEVKEESQKRELVSNSIK 174

Query: 539 KET-PVSRELATQKRH 583
           + T P +  + T+ R+
Sbjct: 175 EATSPKTSSILTKPRN 190


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 616 NYSWYMNLGFNVTFLCCKFPGHRSFFLYY 530
           NYSW+M +  +  +   KF   R F LY+
Sbjct: 115 NYSWFMPVFHSYPYNIQKFDAARYFILYH 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,639,106
Number of Sequences: 5004
Number of extensions: 85049
Number of successful extensions: 270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 840441776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)