Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_G10_e79_14.seq
         (1502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    31   1.8  
06_02_0069 - 11126235-11127538,11128361-11128421                       30   4.1  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    29   9.5  

>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +2

Query: 335 PPSEYTYEIFFSFINKQHLNDDNLEKIRNSATENTDDFESIATNTEQLPTGRNQVKSNSD 514
           PP     +I  S  N  +L + +++++ +  TE+TD   + AT+TE   T +   +S  +
Sbjct: 496 PPLYLRLDIH-SLFNDDNLREHSIQEV-DMETEDTDGASNTATSTEAENTQKAVSESLDN 553

Query: 515 THDGDI 532
            HD DI
Sbjct: 554 GHDQDI 559


>06_02_0069 - 11126235-11127538,11128361-11128421
          Length = 454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 248 PGHSPEHNEHHLGYNNRVFSQPATLAIYDPPSEYTYEIFFSFINKQHLND 397
           P    EH  HH GY+N +      + +    S + Y      INK+H  D
Sbjct: 384 PEDGHEHANHHGGYDNHIVFNKQAVKLRKGNSNWYYYSGLKEINKRHKPD 433


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 494 QVKSNSDTHDGDIVKKETPVSRELATQKRHIEAQVHIPAVVAKSTGA 634
           Q + + D HDG  V  E+P S+E    K  ++A++    +VAKS  A
Sbjct: 505 QYQDSEDIHDGPNVSGESPRSKE---PKITVDAEIGTRNLVAKSINA 548


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,225,808
Number of Sequences: 37544
Number of extensions: 545338
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4814874820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)